Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0217 ATGATTTATAGGGTTGGAATGGGTTGTAACTTTTCGAAGTGCACCGAATGCTGTTGGAGTACAGAGCAGCCGCAAGATCGTCCGCTTCCTGAGGTTCATGTTGATGAAAATGAAGACCACAATGAGGGCAGTGGCTTGCCACCATTTCACGAATTCACATTTGATCAGATTAAGAATGCTACATCTGGATTTTCAGTAGAAAATATAGTTTCCGAGCATGGAGAAAAGGCGCCAAATGTGGTCTATAAAGGGAAACTCGAAAACCAAATGCGAATTGCTGTGAAATGGTTCAACAGATCAGCCTGGCCAGATGTCCAGCAATTTTTGGGAGAGGCCAGAGCTGTCGGTCAGCTAAGGAATCCAAGATTGGCAAATCTGCTTGGATGTTGCTGTGAAGGTGAAGAGAGGTTACTTGTTGCCGAATATATGCCCAATGACACTTTGGCAAAACACTTGTTCCATTGGGAAACTCAGCCCATGAAATGGGCTATGCGACTGAGAGTTGCTTTACATCTTGCCCAAGCTCTAGATTACTGTACCAACAAAGGACGTGCTCTATATCATGATCTAAATGCTTACAGAGTTCTTTTCGATGATGAATACAATCCCAGACTTTCATGCTTTGGTTTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACCAATTTGGCATTTACTCCACCTGAGTATTTGAGGACAGGTAGAGTTACACCAGAGAGTGTAACTTACAGCTTTGGGACCCTTTTGCTCGATCTTCTCAGTGGAAAACATATCCCTCCAAGCCATGCCCTTGATCTGATAAGGGACAAGAACCTTCAGATGCTAACAGACTCTTGTTTAGAAGGACAAACAAATGACGAGGGGACCGAATTAGTTCGTCTGGCCTCACAATGTTTGCAATATGAACCGCGAGAGCGCCCTAATCCAAAATCATTGGTCACTGCTCTTATACCATTGCAGAAAGATTCCGAGGTTCCTTCTCATGTGCTGATGGGTATACCAGATGACAATGCTGCATTTCCCCTTTCTCCGCTTGGTGAAGCTTGTCAGCGAATGGATCTGACTGTCTTACATGAGGTGGTAGAGAAACTTGGGTATAAAGATGATGAGGGTACGGCGACCGAGCTTTCGTTCCAAATGTGGACAAACCAGATGCAGGAGACATTGGATTCAAAGAAGAACGGGGATGCTGCTTTTCGGCAGAAGGACTTTAAAACTGCTATTGATAGTTATACACAGTTCATCGAGGTCGGAACAATGATTTCACCGACAATCTACGCACGCCGTAGTCTATCATATCTCATGAACAATATGCCAGAAGAAGCACTTGCTGATGCAATGCAGGCACAAATAATATCTCCTGTTTGGCACATTGCATCTTATTTGCAAGCTGTTGTTCTTTTAGCACTGGGAAGGGATCATGAGGCCCAATTGGCACTTAAAGAGGGTACTTCACTTGAAACTAAAAAGAACACAAATAAGTAG 1488 0.4362 MIYRVGMGCNFSKCTECCWSTEQPQDRPLPEVHVDENEDHNEGSGLPPFHEFTFDQIKNATSGFSVENIVSEHGEKAPNVVYKGKLENQMRIAVKWFNRSAWPDVQQFLGEARAVGQLRNPRLANLLGCCCEGEERLLVAEYMPNDTLAKHLFHWETQPMKWAMRLRVALHLAQALDYCTNKGRALYHDLNAYRVLFDDEYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLTDSCLEGQTNDEGTELVRLASQCLQYEPRERPNPKSLVTALIPLQKDSEVPSHVLMGIPDDNAAFPLSPLGEACQRMDLTVLHEVVEKLGYKDDEGTATELSFQMWTNQMQETLDSKKNGDAAFRQKDFKTAIDSYTQFIEVGTMISPTIYARRSLSYLMNNMPEEALADAMQAQIISPVWHIASYLQAVVLLALGRDHEAQLALKEGTSLETKKNTNK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0217 495 SUPERFAMILY TPR-like 393 488 IPR011990 GO:0005515
Lan18g0217 495 Gene3D Transferase(Phosphotransferase) domain 1 144 334 - -
Lan18g0217 495 Pfam Protein tyrosine and serine/threonine kinase 80 316 IPR001245 GO:0004672|GO:0006468
Lan18g0217 495 ProSiteProfiles Protein kinase domain profile. 67 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0217 495 SUPERFAMILY Protein kinase-like (PK-like) 42 326 IPR011009 -
Lan18g0217 495 Gene3D Phosphorylase Kinase; domain 1 37 142 - -
Lan18g0217 495 Gene3D Tetratricopeptide repeat domain 387 495 IPR011990 GO:0005515
Lan18g0217 495 PANTHER TPR DOMAIN KINASE 7 494 - -
Lan18g0217 495 MobiDBLite consensus disorder prediction 28 45 - -
Lan18g0217 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 7 494 IPR045845 GO:0004672|GO:0009742
Lan18g0217 495 MobiDBLite consensus disorder prediction 23 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0217 Lan-Chr18 2164567 2172980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0217 52 317 Glycoside Hydrolase AT3G07070 34.576 5.61e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lan18g0217 PK_Tyr_Ser-Thr 5.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0217 K14500 - gmx:100819210 825.854