Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0211 ATGGAAATGGTTACAGAGAATATGAAGAGACAACTTTGTTTGGCTGTGAGGAGCATACAGTGGATCTATGCAATATTCTGGTCTGGTTCAGATACCAACCCAAGGGTCTTGAGCTGGGGAGAAGGATATTACAATGGAGACATTAAGACAAGGAAAACAAATCAAGGATTAGAACTTAATTCTGACCAAATTGGGTTGCAGAGGAGTGAGCAACTTAGAGAGCTATTCAGATCCCTCAAAACTACAGAAACAACTAAAAAGCCTTCAGCAACACTTCCCCCTGAAGATCTCACTGATACTGAGTGGTTACCTGGAAGAACTCTAGCGAATGACCGGCCTATTTGGTTGTGCAATGCGCATTCTACCGATTGTATACTTTTTAGTCGCTCTCTGCTCGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCATTTATGGAAGGGGTTATTGAGCTCGGTACAACTGATCTTGTGCAAGAAGATCTTAGTCTTATTCAACAGATCAGAACTTCCTTCTTGAATATTCTGGAAGTCGATGTTTCTAAAAAGGCAGGACCTACATTGAACACGAGAAACGACGAAGATGTTGAGTGCGCAGCATTTGGTCAAAATGCTTATAATGTTAAATCAACTGCAGAAGTAGGAAATGAAGTAATCAACACAACCTCTCCGAATATTTCAGATGCGTTACAAGCTAATCAACCAGCAGAAGAAGCATTGATGGTTGAAACCTGGCAAGTTATGGATGATGAATTAAGCAATTGTGTTCATAACTCCATGCATTCTAGTGACTGTATATCTCAAACTTTTGTTAGTCCTGAGAAGATCGCTTCGGTTGCCAATGGCGAAAATACTAATGACCATTATGCCGAAGACCTTCAGAAGTTCAATAACCCGAAAATGACCTTAGTGGATCCTCAAAGCGACGATTGGCGTTATCAGAGTGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTAACTATGGGAACACGTTTCCAAAATTTTCATCAGGAATCGAGCTTTGTCAGTTGGAAGAAAGGAGAGCCAATCGATTGCCGAAGGCCAAGAGCAGGAAAGTCGCAAAATTTATTGAAGAAAGTATTGTTTGAAGTTCCTCAGATGCACTTGGAGGGGTTGCTTGAGTCTCAAGAAGATAATGACTATAAAGATGGAACAAGACCGGACGTAGATGAAAACGGCACGAACCATGTTTTGTCCGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTAGTAAGGATGACAAGGTTTCAATACTTGATGATGCAATAGAATACCTTAGAAAAATCGAGAAAAGGATAAGAGAATTAGAAGCTCAAAGGGATATAATAGATATAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGATAATTATTTCAACAAAATTGATACTAATGGCAAGAAGCCATTGGGTAAAAAGAGGAAGGTTTGTGATATCGATGCGGCACACGTCGAGATTAATTCGGATGCTTTTAAAGGTAGCTCTGCTAATGATGTCACTGTCAGTGTGAGTGGCAATGAAGTTGTAATAGAAATGAAGAGCCTTTGTAGACAAGGAAGGGTGCTAGAAATTATAGAAGCAGTTAGCTCTCTCAATTTAGATCTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATGTTTATCTGAAAATTAAATCTAAGTTCCAGGGACCAACTATTGCATCAGCAAAAAAGATCAAACAAACACTCCAAAGAGTGGCTCCCAAGTCTTGA 1812 0.3985 MEMVTENMKRQLCLAVRSIQWIYAIFWSGSDTNPRVLSWGEGYYNGDIKTRKTNQGLELNSDQIGLQRSEQLRELFRSLKTTETTKKPSATLPPEDLTDTEWLPGRTLANDRPIWLCNAHSTDCILFSRSLLAKSASIQTVVCFPFMEGVIELGTTDLVQEDLSLIQQIRTSFLNILEVDVSKKAGPTLNTRNDEDVECAAFGQNAYNVKSTAEVGNEVINTTSPNISDALQANQPAEEALMVETWQVMDDELSNCVHNSMHSSDCISQTFVSPEKIASVANGENTNDHYAEDLQKFNNPKMTLVDPQSDDWRYQSVLSTLLKSSDQLTMGTRFQNFHQESSFVSWKKGEPIDCRRPRAGKSQNLLKKVLFEVPQMHLEGLLESQEDNDYKDGTRPDVDENGTNHVLSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLRKIEKRIRELEAQRDIIDIEARTKRSPQDMVERTSDNYFNKIDTNGKKPLGKKRKVCDIDAAHVEINSDAFKGSSANDVTVSVSGNEVVIEMKSLCRQGRVLEIIEAVSSLNLDLNSVQSTEADGNVYLKIKSKFQGPTIASAKKIKQTLQRVAPKS* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0211 603 Pfam Helix-loop-helix DNA-binding domain 403 448 IPR011598 GO:0046983
Lan18g0211 603 PANTHER TRANSCRIPTION FACTOR EGL1 5 599 - -
Lan18g0211 603 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 403 463 IPR036638 GO:0046983
Lan18g0211 603 Gene3D - 394 464 IPR036638 GO:0046983
Lan18g0211 603 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 449 IPR011598 GO:0046983
Lan18g0211 603 SMART finulus 406 455 IPR011598 GO:0046983
Lan18g0211 603 MobiDBLite consensus disorder prediction 382 405 - -
Lan18g0211 603 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 173 IPR025610 -
Lan18g0211 603 Coils Coil 439 466 - -
Lan18g0211 603 PANTHER TRANSCRIPTION FACTOR TT8 5 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0211 Lan-Chr18 2089261 2094262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0211 4 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 42.212 2.26e-154 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0211 bHLH-MYC_N 1.1e-35 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0211 - - gmx:100808167 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0211 18 2089261 2094262 Lan6g1262 6 13043292 13047518 LSH