Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan18g0200 | ATGGGTGTTTGCTGTTTTTGTTGTTCATTCAAGGAAAATGAATTGGTTGCTCAACCTTCATACTACTATTACCCAAGAGAACCAGAGGAGCATGTTCCACTATCATCTAACCCGGATATTGCCTCTTCTTTCTCTGGTCCACTCTTAGTTGATACTAATCTTGTGACTTCAAGTCCTGATACTTATAGAGCACCTCCTGCTCCTATCCCTTTCAATGTTACTTTAGGCGCCACCCAAACTCCACTTGTGGCTGAAGTAATTCATGGTGACAATCATGAGACATCGGCCAAGTTGGAAGAGGTGAAGGAATCAGAGTCCAAAGTTCAGACTGATTTAGAGCCTAACTCAACGAAGGATCCTGAAATTGGACTTGCAAAGTTGGGAGAACGTATTAGTTTAGCAGAGGAGGATGATTGCCCAATTTGTCTAGAAGAGTATGATGCAGAGAATCCAAAACTTACTACAGATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGACCGAAAGAAGTGAAACTTGCCCTATTTGTGATAAGGTTATGGTTCTCAATATTGAATAG | 567 | 0.4127 | MGVCCFCCSFKENELVAQPSYYYYPREPEEHVPLSSNPDIASSFSGPLLVDTNLVTSSPDTYRAPPAPIPFNVTLGATQTPLVAEVIHGDNHETSAKLEEVKESESKVQTDLEPNSTKDPEIGLAKLGERISLAEEDDCPICLEEYDAENPKLTTDCDHHFHLACILEWTERSETCPICDKVMVLNIE* | 189 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan18g0200 | 188 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 90 | - | - | |
| Lan18g0200 | 188 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 83 | 186 | - | - | |
| Lan18g0200 | 188 | SUPERFAMILY | RING/U-box | 130 | 185 | - | - | |
| Lan18g0200 | 188 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 185 | IPR013083 | - | |
| Lan18g0200 | 188 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 83 | 186 | - | - | |
| Lan18g0200 | 188 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 90 | - | - | |
| Lan18g0200 | 188 | SMART | ring_2 | 139 | 179 | IPR001841 | - | |
| Lan18g0200 | 188 | Pfam | Ring finger domain | 137 | 179 | IPR001841 | - | |
| Lan18g0200 | 188 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 180 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan18g0200 | Lan-Chr18 | 1911831 | 1914436 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan18g0200 | 1 | 186 | C3H Transcription Factor Family | AT5G41350 | 48.341 | 3.93e-57 | 177 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan18g0200 | - | - | gmx:100790079 | 252.292 |