Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0193 ATGGGTCACCATTCATGCTGTAATCAACAGAAGGTTAAGAGAGGGTTATGGTCCCCTGAGGAAGATGAGAAACTCATTAGATATATTACCATTCATGGCTATGGCTATTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGATGTGGCAAAAGTTGTCGCTTGAGATGGATTAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACATGAGGAAGAGAAGTTAATTATAAACCTTCATGGTGTTGTAGGGAACAGATGGGCTCATATTGCAAGCCACTTGCCTGGAAGAACTGATAATGAGATAAAGAATTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTGGGTGTCTTCAAACACCAATGTTTCAAAATATGTTGATTATTCAAAGTTAGATTTCAATTCCAATCAACTTGATCATTATGCCAATTGCAAGCAAGATAATCTAACAACAAAGTTACCACAAGTTCAAGAAACCTTATTTTCTTCCACATGCCCTCTATTTATGTTTGACACTAGTTCACTAGATCATGGGACAACAACCTTAATGGACAACAATATAAGACCATATCTCTTCCAAGATGCTGTGGGTTTGAGCACTGAAACATGGAACTTAAGCCATCATCAACAAGTTCAGGAACCTTTTACTATTGGCTTGGACAACACCAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTTCCAATTGAAGTACAATCTTGTAGTATGAATGAGCAAGGAGATGTTGCACTAGAAAGCCTACAGAGACAAGAGTTGAATGAATGGGTAGAAACTCAACAGCAACAATGTCCTAACTTCTTTTTCTGCTGGGACAATGTTGAAGGACAACTTGGTGGGGAAGAACTTGCACCAATTTCATCAAATATGATAACAAATACACTTCCTTCTTTTCCTTAA 939 0.3749 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITIHGYGYWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTHEEEKLIINLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPWVSSNTNVSKYVDYSKLDFNSNQLDHYANCKQDNLTTKLPQVQETLFSSTCPLFMFDTSSLDHGTTTLMDNNIRPYLFQDAVGLSTETWNLSHHQQVQEPFTIGLDNTNYLPPLIENVENMVPIEVQSCSMNEQGDVALESLQRQELNEWVETQQQQCPNFFFCWDNVEGQLGGEELAPISSNMITNTLPSFP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0193 312 CDD SANT 69 112 IPR001005 -
Lan18g0193 312 SMART sant 13 63 IPR001005 -
Lan18g0193 312 SMART sant 66 114 IPR001005 -
Lan18g0193 312 CDD SANT 17 61 IPR001005 -
Lan18g0193 312 Gene3D - 6 66 - -
Lan18g0193 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan18g0193 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan18g0193 312 PANTHER MYB TRANSCRIPTION FACTOR 1 312 - -
Lan18g0193 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan18g0193 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan18g0193 312 PANTHER MYB DOMAIN PROTEIN 55 1 312 - -
Lan18g0193 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan18g0193 312 Gene3D - 69 116 - -
Lan18g0193 312 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan18g0193 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0193 Lan-Chr18 1798986 1801468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0193 1 297 MYB Transcription Factor Family AT1G63910 49.444 6.63e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan18g0193 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0193 K09422 - gmx:100797787 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1115 18 16150294 16152660 Lan18g0193 18 1798986 1801468 PCT