Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0159 ATGAATTATAATTACCAAGGGGCTCTAATGGGTGTTTCACAATCTCCAAATCCATCTCCTTCACATCTATATCCACAAGAAATTCAGCTTAAACTTTATCAAGCTTTCATATTCTCAATTCCTATACTCTTTACTATTATTCTAATTCTCTTGTTTTACTTGTTCTATCTCAAGAGAAGAGCTTCCTCTCTCATACACCCTCCACTACACATAATTACTAGGAGTTCTAATCCTCAAACTACATATTCATATCCTTCTTCACCTTATCGTTTAGATCATCTCACGGTACAAGTTTTGGACAAACTTCCAAGAGTTTTATTTGATGAAGATTTGAGAGCAAGGGATTCAGTATGTTGTGTTTGTCTAGGAGAATTTGAGCTGAAAGAAGAGGTGTTACAAATTCCTTATTGCAAACATGTGTTTCACATAGAATGCATACATAATTGGCTTCAATCAAACACAACATGTCCACTATGTAGATGTTTTATTATCCCCACCACTATTACTACTAAGTTCCTTACTCCACCACCATCTATTTTATTAGACCCACCACAACAAAGTGGTGTTGTTTCAACCTCTCCTTCACATATCATATCATTGCCTCCTCAACTACAAGATGAAGCAAGTGTTTCCTCAAATTATAATACCCATATTTCAAGGGAATGA 666 0.3529 MNYNYQGALMGVSQSPNPSPSHLYPQEIQLKLYQAFIFSIPILFTIILILLFYLFYLKRRASSLIHPPLHIITRSSNPQTTYSYPSSPYRLDHLTVQVLDKLPRVLFDEDLRARDSVCCVCLGEFELKEEVLQIPYCKHVFHIECIHNWLQSNTTCPLCRCFIIPTTITTKFLTPPPSILLDPPQQSGVVSTSPSHIISLPPQLQDEASVSSNYNTHISRE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0159 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 13 172 - -
Lan18g0159 221 SUPERFAMILY RING/U-box 96 166 - -
Lan18g0159 221 Pfam Ring finger domain 118 160 IPR001841 -
Lan18g0159 221 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Lan18g0159 221 SMART ring_2 118 159 IPR001841 -
Lan18g0159 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 164 IPR013083 -
Lan18g0159 221 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0159 Lan-Chr18 1315889 1318080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0159 13 165 C3H Transcription Factor Family AT4G10150 38.462 6.51e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0159 K19039 - pvu:PHAVU_002G300500g 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1180 17 19996142 20000576 Lan18g0159 18 1315889 1318080 LSH
Lan18g0159 18 1315889 1318080 Lan6g1205 6 12155170 12158176 LSH