Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0120 ATGAGAACTCGAAATGCCGATTCTTCCAAATCCGCAACCCCTAAAAAGACACCACCGCCCAGAAAATCCGCCACTAAAACCGCCGCTGACTCCTCCGCCGCCAACCGCTCTACTCCGCCAAGAACGAGGCAGATGAGGAAGAAAGACGCCTCGCCCTCACTCAACCCTATCTCCGATTCCAATCCGCTTCAATCGCGTCAACTACCGAAATCATCGGGTGATGCTGCTACAACTACAAAATCTGCGAAGAAGAGGGCACCGGGGAGACCGAGAACTAAACCAATTGCCACTCCAAACCTGGAAGAAAAATTGGAGGCAACAGTTGATGAAACTCCAATTGTGGATAATTTTGAGGCAGATGAGAAAGTGGAAGAGCCTCAAGATGTTGAACTAGTTGATGCACATACTATTACGAGTCAGGAGGTGGGGGAACAAGGCGCTTGTTCTGTTGGAAAATCTGAAGAGAAGGAACAAAAGACCATGAAAGTGGATGGAGCTGTTGTCAGAAATGTTTGCGAATCGGAAGAGAAGGGAGAGAACATTGTGACAATTGAATTAACTGCTTCTCAGGATGCTGCCATTTCTTTCAAACAACCAGAGCGCAACATAGTTGACCTCAATATATCTGTGGATGCTGAAGATTCTACTGGTGCAAAGGAGGGAGAGAAAGGAATGGAAGAGTTTAACGAACAGGAGGGAGAGAAAGCAATGGAAGAGTTTAACGAACAGGAGGGAGAGAAAGGGATGGAAGAGTTTAAAGAACAGGAGGGAGAGAAAGGAGAGGAAGAGATTATAGAGCAGGAGGGAGAGAAAGGAGTGGAAGAGTTTAATGAAGACGAGAGAGAGAAAGGAGAGGAGGAATTTAAAGAACAGGGGGGAGAAAAAGGAATGGAGGAGTTAAAAGAACAGGATGTGGGGAAAGCAAAGGAAGGGCTGAAAGACGAACAGGAGGGCGAGAAAGGAAAGGAACAGGTGAAAGAACAGGAGGGAGAGAAAGGAAAGGAAGAATTGAAAGAAAAGGAAGAACTGAAGGAAGAGGAAACTAACATTATTGCACACAAAGAGCAATCTAGTACTGTGTCTTTTAGCGTAGGAGTGAAAGATCAAGTGCAAAAGGACGTTAATCCTGAAAAGGATGTTGATGAAGGAATGAAGAGTAGTGAAAAGTTAGATCTTGGAGAACAAGATGGAGAGGACTTTATTGAGGAAGATCCTGAGGAACCTCCAGAAGAACCTGAGGCATTTGAAGAGCAGCATATAGAATATGAGGCCATTGCAAAACAGCGACAAATTAACAAAGAACATGAGATATTTGTGGGAGGGCTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTGAGAGGATTGGGGAGGTAGTTGAAGTCAGGTTGAACAAAAATTCTTCAACAAATAAAAATAAGGGCTATGCATTTGTGAAGTTTGCTAATAAGGAACATGCAAAAAAGGCTTTGTCAGAAATGAAGAACCCTGTTATACATGGTAAACGATGTGGCACTGCACCCTGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACTAAAGAAGCTATTAAACAGAAGTTAATGGATTATGGTATTGAAGGGGTTGAAAACATTACACTTGTCCCAGATGTTCAACATGAAGGGTTGAGCCGAGGTTTTGCATTCATTGAGTTTTCTTGTCATGCTGAGGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGCCATCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGCCTTTGCTGAACCCATACATGAAGCAGACCCAGAGACAATGGCACAGGTGAAATCTGTGTTTATTAATGGTCTACCTCCTCACTGGGATGAAGATCGTGTTAGGGAACTGTTAAAATCTTATGGTGAAATTGTTAGAGTAGTACTAGCACGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTCTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGACGGGGCATCAAAGATAAAAGTGAGAGCCAGGCTTTCAAATCCTTTGCCTAAAACACAGGCTGTAAAAGGTAGCATGTCCGGTGGGTTCAGAATTGGTCATGCTAGGACTGGAGCTTTTCCAAGACCTGGAAGGGGTTTTGGGCGTGGAAGACAGCCTTTCAACAACTGGGGAAATTCCAACAGGGATAGGAATTTCTATCGTGGTCGTGGTGGATACAGTCAATTTGGAAGAATGGGTTCTCGGGATGACCGTGATTTTAATATGCATCCAGATTTCCATCATAGGCAATTTGCAGGAACTGTGAGGGGTGGGCATTATCCAGGTAGCCGAGGTGCTGCATTTGTCCGGCCATCTAGACATCATGATAGACCCTGGTATGGCATCCCTGATGAAGGTCCTAGGGAACCAATTCCTATGAGAAGGCCCTACTCCCCAGGTGGACAGTTCGACAGGCCTTTTATGGGACAGCATTTTGATGATCCATATCTCCATGATGACAATTTGCATGGGTTGAAACGTCCATTTTATATGACTGAGCCTGAACCTGATTACATGGGACCTAGTAGACTTCGACCTCGACTGGACTATGCAGATCCAGCTTTGTTCCAAGGAAATCATTCCCAAGATCCTTTTGGGGAAGCCAGCACACAGTACCCACATGACCATTATCATTATGGTTCAAATTATGGTGGAGGTCCATATTCATCTTTTTATGAGGGTGATAGCTCACATGGGCACAGATACTACTATTAG 2796 0.4417 MRTRNADSSKSATPKKTPPPRKSATKTAADSSAANRSTPPRTRQMRKKDASPSLNPISDSNPLQSRQLPKSSGDAATTTKSAKKRAPGRPRTKPIATPNLEEKLEATVDETPIVDNFEADEKVEEPQDVELVDAHTITSQEVGEQGACSVGKSEEKEQKTMKVDGAVVRNVCESEEKGENIVTIELTASQDAAISFKQPERNIVDLNISVDAEDSTGAKEGEKGMEEFNEQEGEKAMEEFNEQEGEKGMEEFKEQEGEKGEEEIIEQEGEKGVEEFNEDEREKGEEEFKEQGGEKGMEELKEQDVGKAKEGLKDEQEGEKGKEQVKEQEGEKGKEELKEKEELKEEETNIIAHKEQSSTVSFSVGVKDQVQKDVNPEKDVDEGMKSSEKLDLGEQDGEDFIEEDPEEPPEEPEAFEEQHIEYEAIAKQRQINKEHEIFVGGLDRDATEEDLRKVFERIGEVVEVRLNKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPCEDNDTLFLGNICNTWTKEAIKQKLMDYGIEGVENITLVPDVQHEGLSRGFAFIEFSCHAEAMLAYKRLQKPDAIFGHAERTAKVAFAEPIHEADPETMAQVKSVFINGLPPHWDEDRVRELLKSYGEIVRVVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGSMSGGFRIGHARTGAFPRPGRGFGRGRQPFNNWGNSNRDRNFYRGRGGYSQFGRMGSRDDRDFNMHPDFHHRQFAGTVRGGHYPGSRGAAFVRPSRHHDRPWYGIPDEGPREPIPMRRPYSPGGQFDRPFMGQHFDDPYLHDDNLHGLKRPFYMTEPEPDYMGPSRLRPRLDYADPALFQGNHSQDPFGEASTQYPHDHYHYGSNYGGGPYSSFYEGDSSHGHRYYY* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0120 931 CDD RRM_SF 517 580 - -
Lan18g0120 931 Gene3D - 598 758 IPR012677 -
Lan18g0120 931 MobiDBLite consensus disorder prediction 795 821 - -
Lan18g0120 931 CDD RRM_SF 437 505 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 215 352 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 371 394 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 718 742 - -
Lan18g0120 931 CDD RRM_SF 615 689 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 796 818 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 49 79 - -
Lan18g0120 931 Gene3D - 515 597 IPR012677 -
Lan18g0120 931 SUPERFAMILY RNA-binding domain, RBD 436 580 IPR035979 GO:0003676
Lan18g0120 931 SUPERFAMILY RNA-binding domain, RBD 608 695 IPR035979 GO:0003676
Lan18g0120 931 MobiDBLite consensus disorder prediction 138 162 - -
Lan18g0120 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 406 924 - -
Lan18g0120 931 Coils Coil 326 357 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 1 40 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 214 415 - -
Lan18g0120 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 515 600 IPR000504 GO:0003723
Lan18g0120 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 613 693 IPR000504 GO:0003723
Lan18g0120 931 MobiDBLite consensus disorder prediction 395 415 - -
Lan18g0120 931 MobiDBLite consensus disorder prediction 353 368 - -
Lan18g0120 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 615 681 IPR000504 GO:0003723
Lan18g0120 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 517 581 IPR000504 GO:0003723
Lan18g0120 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 437 505 IPR000504 GO:0003723
Lan18g0120 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 435 505 IPR000504 GO:0003723
Lan18g0120 931 MobiDBLite consensus disorder prediction 1 113 - -
Lan18g0120 931 SMART rrm1_1 614 689 IPR000504 GO:0003723
Lan18g0120 931 SMART rrm1_1 436 509 IPR000504 GO:0003723
Lan18g0120 931 SMART rrm1_1 516 596 IPR000504 GO:0003723
Lan18g0120 931 PANTHER NUCLEOLIN-LIKE ISOFORM X1 406 924 - -
Lan18g0120 931 Gene3D - 364 514 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0120 Lan-Chr18 944594 954564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0120 437 681 Eukaryotic Initiation Factors Gene Family AT2G23350 23.016 1.50e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0120 - - gmx:100784338 1058.13