Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0086 ATGGGAGATGAAAATTCAACAGAATCAATGTCTTCTTCTGAAAGTGTAAATATCAATATTCGTTGCTCCAATGGTTCCAAGTTTTCTATTCAGATTCCTCTTCATTCCACTGTCCTTTTGTTCAAGAATCTCATCTCTCATAATTCAAACATTCCATCACAACAACAGCGTCTTATCTACAAGGGTCGTATCTTAAAGGATGATCAAACCCTCATAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCACCTGCCAATACAACTGATGGGAGTGGGACCAATACAAGTGGCCCGAATACCACAACGAATAATGCCAGGGGTTCTAGTGCTAATGAGGGTGGGGGTTTAGGAGGGGTTGATTTTGAAACGATGTTCCCTGGATTCAATGCGATTGGAGGTAATGGCTTGTTTGGAGAGGGCTTTCCAGATCTTGAACAAATGCAGCAACCACTTATTTCAAATCCCAATTTAGTGAGAGAAATGATGAACATGCCTGCTGTGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAGTAACCCGCAGTTGCAAGAGCTCATGGATCGGAACCCTGAGCTTGCACACATACTTAATGATCCGAGCACTCTCCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGTAACATTGAATCTTCTCCTGAGGGATTTAACATGCTAAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAGCAACAATACAGCCATTTCGGGGAATCAAGGCAGGGGTCCATCAACTAACCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTACCTTGCCCAATACTAATCCGCTTCCTAATCCCTGGTCCTCTACTGGAACTATAGGTGCCCAAAATAACACCAGAAGGTCAGCCATTGGTGGGGATGGTAGGCAACAGACGCCTAGTAGCTTAGGAGGGCTTGGTCTGCCTGACCTTCAAAGCATGCTGGGTGGTGGCACTATGCCAGATGCTGCTTCGTTGACTCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCGAAGTGTCCTTTCCAACCCACAGACTTTAAATCAGATTATTGGTGCTAATACTCAGCAACAAGGCATGCCTGATTTAAGTTCTATCAGAGAAGTGATGCAAAATCCCGAGTTCCTTCGCTGGTTTTCTTCACCTGAGTCACTGCAGCAACTTTTGTCTTTCCAGCAAGCTTTTATGTCTCAGCTTGGCCAGCAACAATCAACACAGGAATCAGGTCAAGCTGGTGGAGGAGACACTGGATCAAGGAACAACTTGGGGTTGGACATGTTATCGAGCATGTTCGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCTGAGCAATTGTATGCCAGCCAGCTTTCACAACTTGAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCCACTTCCGGAAATGTTCACGCAGCAGTCGAACGGCTTTTGGGCAATTCCGGTCAGTAG 1611 0.4475 MGDENSTESMSSSESVNINIRCSNGSKFSIQIPLHSTVLLFKNLISHNSNIPSQQQRLIYKGRILKDDQTLISYGLEADHTVHLVRGFAPANTTDGSGTNTSGPNTTTNNARGSSANEGGGLGGVDFETMFPGFNAIGGNGLFGEGFPDLEQMQQPLISNPNLVREMMNMPAVQNLINNPEIVRNLIMSNPQLQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGSNNTAISGNQGRGPSTNPSTTSSEATAGSTLPNTNPLPNPWSSTGTIGAQNNTRRSAIGGDGRQQTPSSLGGLGLPDLQSMLGGGTMPDAASLTQLMQNPAISQMMRSVLSNPQTLNQIIGANTQQQGMPDLSSIREVMQNPEFLRWFSSPESLQQLLSFQQAFMSQLGQQQSTQESGQAGGGDTGSRNNLGLDMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLEEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0086 536 MobiDBLite consensus disorder prediction 265 345 - -
Lan18g0086 536 Gene3D - 476 536 - -
Lan18g0086 536 MobiDBLite consensus disorder prediction 91 121 - -
Lan18g0086 536 SMART CBM 190 229 IPR006636 -
Lan18g0086 536 SMART CBM 338 391 IPR006636 -
Lan18g0086 536 SMART CBM 140 177 IPR006636 -
Lan18g0086 536 SMART CBM 393 429 IPR006636 -
Lan18g0086 536 CDD UBA_PLICs 494 532 - -
Lan18g0086 536 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 488 533 IPR015940 -
Lan18g0086 536 SMART ubq_7 16 87 IPR000626 GO:0005515
Lan18g0086 536 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
Lan18g0086 536 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Lan18g0086 536 MobiDBLite consensus disorder prediction 440 463 - -
Lan18g0086 536 MobiDBLite consensus disorder prediction 92 116 - -
Lan18g0086 536 Gene3D - 185 243 - -
Lan18g0086 536 CDD Ubl_Dsk2p_like 16 88 - -
Lan18g0086 536 Gene3D - 2 99 - -
Lan18g0086 536 SMART uba_6 494 532 IPR015940 -
Lan18g0086 536 PANTHER UBIQUILIN 7 536 - -
Lan18g0086 536 MobiDBLite consensus disorder prediction 265 358 - -
Lan18g0086 536 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 7 536 - -
Lan18g0086 536 SUPERFAMILY UBA-like 490 532 IPR009060 GO:0005515
Lan18g0086 536 SUPERFAMILY Ubiquitin-like 6 100 IPR029071 -
Lan18g0086 536 Pfam UBA/TS-N domain 494 530 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0086 Lan-Chr18 634544 639458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0086 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.14e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0086 K04523 - gmx:100776447 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0154 17 962778 967743 Lan18g0086 18 634544 639458 LSH
Lan18g0086 18 634544 639458 Lan6g0245 6 1834431 1840640 LSH
Lan17g0154 17 962778 967743 Lan18g0086 18 634544 639458 PCT
Lan18g0086 18 634544 639458 Lan18g0086 18 634544 639458 PCT
Lan6g0245 6 1834431 1840640 Lan18g0086 18 634544 639458 PCT
Lan18g0086 18 634544 639458 Lan17g0154 17 962778 967743 PCT
Lan18g0086 18 634544 639458 Lan6g0245 6 1834431 1840640 PCT