Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0084 ATGGGTCTCTGTTTTTCTTCTCTACTCTCTTCTCCTTCTAATCCAAACTCCTCTTCCCTCAAAAGCCCTCACTTTTCAGCCACCACGACTGCTTCAACAAGCAGTGTGGTGAAAAGTCAGTTTTCAGAGATAGGGAGTGGAAGCATTGATGGTGGTGGGTACCAAAATCAAGATGATGATAAGATTGTGGAGAGGCCAAACTTGAAGGTGTTCAGTTTTGCAGAGATGAAATCAGCAACAAAGGGTTTCAGGTCAGATACATTGTTAGGTGAAGGTGGTTTTGGGAAAGTGTATAAAGGATGGTTAGATGAAAAGACACTAAATCCAGCTAAATCTGGCACTGGAATGGTTGTTGCTATCAAAAAGTTGAACCATGAAAGTACCCAAGGGTTTCAAGAGTGGCAGTTGGAAGTCAACTTTCTAGGAAGGCTTTCTCACCCGAACCTGGTCAAGCTATTGGGTTACTGTTGGGACGACGACGAGCTTCTTCTCGTGTATGAGTTCTTGTCGAAGGGAAGCTTGGAGAATCATCTTTTCCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTACGGGCGCAGCTAGGGGTTTAGCTTTTTTGCACACTTCCGAGAAGCAAATCATATACAGAGATTTCAAGGCTTCGAATATACTACTCGATGGGAATTACAATGCGAAATTATCGGATCTTGGCTTAGCTAAGTTGGGGCCTTCTGCGGGTGAATCACATGTAACTACTAGGGTCATGGGCACGTACGCCTACGCTGCTCCAGAATACATTGCAACTGGCCACTTGTATGTGAAGAGTGATGTGTACGGCTTTGGCGTGGTGCTGCTCGAAATGCTGACCGGAATGCGGGCGCTTGATACGAATCGGCCAACAGGGCAGCAGAACCTGGTTGAATGGATTAAGCCTAATCTCTTCAACAAAAAGAAGTTGAAAACTATCATGGATGCTAGGATAGAAAGCCAATATTCATTCAAGGCAGCATTACAAGCAGCACAGCTTACTCTAAAATGCCTAGAACATGACCCGAAGAACCGTCCTTCAATGAAAGATGTTGTCGAGTCATTGGAAGGCATCGAAGCTATTCAGGACAAATCAAAGGAATCCAAGAACCGCAATACGAGGTCCGCAGCCCTTCAACATCCCCAGCGGCACCGCCATGCTCGCCATAGCATTACTTGA 1209 0.4516 MGLCFSSLLSSPSNPNSSSLKSPHFSATTTASTSSVVKSQFSEIGSGSIDGGGYQNQDDDKIVERPNLKVFSFAEMKSATKGFRSDTLLGEGGFGKVYKGWLDEKTLNPAKSGTGMVVAIKKLNHESTQGFQEWQLEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFLSKGSLENHLFRRNPNIEPLSWNTRIKIATGAARGLAFLHTSEKQIIYRDFKASNILLDGNYNAKLSDLGLAKLGPSAGESHVTTRVMGTYAYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGMRALDTNRPTGQQNLVEWIKPNLFNKKKLKTIMDARIESQYSFKAALQAAQLTLKCLEHDPKNRPSMKDVVESLEGIEAIQDKSKESKNRNTRSAALQHPQRHRHARHSIT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0084 402 Gene3D Phosphorylase Kinase; domain 1 54 168 - -
Lan18g0084 402 CDD STKc_IRAK 89 368 - -
Lan18g0084 402 PANTHER OS01G0588500 PROTEIN-RELATED 39 380 - -
Lan18g0084 402 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0084 402 MobiDBLite consensus disorder prediction 388 402 - -
Lan18g0084 402 Gene3D Transferase(Phosphotransferase) domain 1 169 393 - -
Lan18g0084 402 SUPERFAMILY Protein kinase-like (PK-like) 64 366 IPR011009 -
Lan18g0084 402 MobiDBLite consensus disorder prediction 372 402 - -
Lan18g0084 402 MobiDBLite consensus disorder prediction 1 31 - -
Lan18g0084 402 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Lan18g0084 402 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 39 380 - -
Lan18g0084 402 Pfam Protein tyrosine and serine/threonine kinase 87 365 IPR001245 GO:0004672|GO:0006468
Lan18g0084 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0084 Lan-Chr18 617161 622409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0084 55 365 Glycoside Hydrolase AT3G07070 50.160 1.15e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan18g0084 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0084 - - gmx:100794193 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0152 17 942275 945675 Lan18g0084 18 617161 622409 LSH