Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0078 ATGCTATTATTATTATTATTATTCCCCCTTTCAAATATTGCTTATGTGTTTGAGATATGCTTTGTGGTGATAATTACTGACTTTTCAATAGGCAATTCCAAAAAAATGCGTAGAGTTTGGCTAGTGGTTTTGATGGTTCTCACCAATGTGTTCTCTTCAACTGGAATTGGTATGGATAATTTCACGATACCCGATTCTGTAAATATCGGGGTTCTATACTCTTTCAATACTAGTGTTGGTAGAATTGTCAAGATTGCTATAGAAGCTGCGGTTGAAGATATAAATTCTGATCCATCTATTCTTAGTAAAACTAAGCTGAAGCTCTCACTACAAGAAGATTCCAAATACAGAGGTTTTTTGAGCATTGCCGAGGCCTTGCAGCTCATGGCGACACACACCGTGGCCATAATCGGCCCTCAAACATCTACAACTGCCCATGTAATATCACATATTGCGAACGAGCTTCAAGTTCCTCTTCTATCATTTTCAGCCACTGACCCTACCCTTTCTTCACTTCAATTCCCGTTCTTTATAAGAACCGCTTTTAGTGATATTTATCAAATGACTGCAATAGCAGACCTTGTTAAATTCTACGGGTGGAGAGAAGTTATTGCAGTCTATGGTGATGACGACCATGGAAGGAATGGAATGGGTGCATTAGGGGATAAGCTTGCCGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGAATCCTGAGGCAACCAGAGAGGAGATTACAGACGTGCTTGTTCAGGTGGCTCTGGCGGAATCACGCGTTATTGTTCTTCATACAAGTACTGCTTGGGGACCAAAAGTGTTTAGTGTCGCAAAGTCTCTTGGAATGATGGAAAATGGGTATGTCTGGATAGCCACCAATTTTCTGTCTACTCGGCTCGACATCGATAGTCCTCTCTCTTCGGATGTAATGGATGAAATTCAAGGAGTTATTACGCTACGTATGTACATACCAGATTCAAAGCACAAAAGATTATTTACTTCTAGGTGGCAAAATTTGATCAGTGGAAAGACTGCTAATGGTTCCCTCGGGCTTAGTACTTATGGTATCTTTGCATATGATACTGTTTATGTGCTTGCTCGTGCACTCGATACATTTTTCAAACAAGGGAACCAAATAACATTTTCATTTGATTCGAAGTTATCTCAACTACGTGGAGACAACATGCATCTCAATGCTGTGAAAATCTTTAACGAAGGAAAATTGTTGTGTGAAAGTATTTATGAGGTTAACATGACTGGTGTATCAGGTCCATTCAAGTATACAACCGATGGAAACCTTGTTAATCCAGCATACGAAATCATCAATGTGATTGGAACAGGGACTCGGAGGGTTGGTTATTGGTCTAATTACTCTGGATTATCAATCGTTCCTCCAGAAACACTTTATTCAAAACCACCTAGTCGTTCCGGTGTAAGCCAGAAGCTACTCACTGTAATTTGGCCAGGAGAAACAGTCGAAAAGCCTCGTGGTTGGGTTTTCCCAAATAATGGAAGGCTGTTAAAAATTGGAGTACCAACAAGGGTTAGTTACCGTCAATTTGTCTCGCAAGTACAAGACACTGACATGTTCAAGGGATTCTGCATCGATGTCTTTCTTTCTGCAATAAATTTGTTGCCCTATGCTGTCCCCTACAAATTTATCCCGTATGGGGATGGTCAGAGAAATCCTAGTAACACTGAGCTTGTCCGTCTAATCACCTCGGGTGTCTTTGATGCAGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAACCATATATCGAGTCTGGTCTAGTGGTAGTTGCAGCGGTTAAGACGACAGAATCCAATGCTTGGGCATTTTTTACACCATTTACACCAATGCTGTGGACTATCACCGCTATCTTTTTCTTAGTAGTGGGAGCCGTTGTTTGGATTTTAGAGCATAGGCTCAATGATGATTTTAGGGGACCCCCCAGAAAACAAATAGTAACAACATTGTGGTTTAGCTTTTCAACTATGTTCTTTGCCCACAGGGAAAATACCGTGAGCACTCTCGGTCGCTTTGTGCTACTTATATGGTTATTCGTAGTTCTTATAATTAACTCAAGTTACACGGCAAGCTTGACTTCAATCCTTACAGTGCAACAACTTTCTTCACCCATTAAAGGCATCGAAAGTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCTTTTACTCGAAACTATTTAATCGGAGAAATCGGTATCGATGAATCCAGACTTGTTCCTCTAAAGACACCAGATGAATCTACGAAAGCACTAGAAAAAGGTCCTCGTAAGGGTGGCATTGCGGCATATGTTGATGAACGTGCTTACATAGAGCTTTTCCTTTCAAGCCAGTGTGGTTTTACTGTTGTAGGCCAAGAGTTCACAAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCGGTTGATTTGTCGACGGCCATTTTAGAGTTGGCAGAGAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAACAGAGCTTGTCTATCACAAGGTGAAAAGTTTGAAGTTGATAGACTCAATCTTAAAAGCTTCTGGGGCCTCTATCTATTATGTGGAATAGCATGTTTACTTGCTCTCTTCATATACCTTATTCAGACCTTAAACCAGTACACTAAGCACTGCCCAATGGAACCGGAGCCTTCTTCCGTCCAAGGCTCCTCCCGATCTTCACATTTCCGGACTTTCCTTTCGTTCGCAGACGAAAAAGAAGAGATAGTTAAGCGGCGCTCTAAGCGAAGGCAAATGGAGAGGATATCATACAGAAGCACAAGTGAGGTTGGATCTTCCATCAGCAATACAGAATATTATCAATCATCTTTGAACAGAATTGATTCTACTAATGAAGTATAA 2925 0.4089 MLLLLLLFPLSNIAYVFEICFVVIITDFSIGNSKKMRRVWLVVLMVLTNVFSSTGIGMDNFTIPDSVNIGVLYSFNTSVGRIVKIAIEAAVEDINSDPSILSKTKLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFSDIYQMTAIADLVKFYGWREVIAVYGDDDHGRNGMGALGDKLAERRCKISFKAPMNPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVFSVAKSLGMMENGYVWIATNFLSTRLDIDSPLSSDVMDEIQGVITLRMYIPDSKHKRLFTSRWQNLISGKTANGSLGLSTYGIFAYDTVYVLARALDTFFKQGNQITFSFDSKLSQLRGDNMHLNAVKIFNEGKLLCESIYEVNMTGVSGPFKYTTDGNLVNPAYEIINVIGTGTRRVGYWSNYSGLSIVPPETLYSKPPSRSGVSQKLLTVIWPGETVEKPRGWVFPNNGRLLKIGVPTRVSYRQFVSQVQDTDMFKGFCIDVFLSAINLLPYAVPYKFIPYGDGQRNPSNTELVRLITSGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVAAVKTTESNAWAFFTPFTPMLWTITAIFFLVVGAVVWILEHRLNDDFRGPPRKQIVTTLWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINSKEPIGYLQGSFTRNYLIGEIGIDESRLVPLKTPDESTKALEKGPRKGGIAAYVDERAYIELFLSSQCGFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLNRACLSQGEKFEVDRLNLKSFWGLYLLCGIACLLALFIYLIQTLNQYTKHCPMEPEPSSVQGSSRSSHFRTFLSFADEKEEIVKRRSKRRQMERISYRSTSEVGSSISNTEYYQSSLNRIDSTNEV* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0078 974 Gene3D - 85 435 - -
Lan18g0078 974 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 964 - -
Lan18g0078 974 Pfam Bacterial extracellular solute-binding proteins, family 3 555 847 IPR001638 -
Lan18g0078 974 CDD GluR_Plant 507 847 - -
Lan18g0078 974 Gene3D - 618 743 - -
Lan18g0078 974 SUPERFAMILY Periplasmic binding protein-like I 62 499 IPR028082 -
Lan18g0078 974 Gene3D - 817 847 - -
Lan18g0078 974 CDD PBP1_GABAb_receptor_plant 68 464 IPR044440 -
Lan18g0078 974 Gene3D - 502 617 - -
Lan18g0078 974 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 80 96 - -
Lan18g0078 974 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 141 169 - -
Lan18g0078 974 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 358 370 - -
Lan18g0078 974 Gene3D - 183 460 - -
Lan18g0078 974 Pfam Receptor family ligand binding region 84 445 IPR001828 -
Lan18g0078 974 Gene3D - 776 816 - -
Lan18g0078 974 SMART GluR_14 508 849 IPR001320 GO:0015276|GO:0016020
Lan18g0078 974 Pfam Ligand-gated ion channel 848 880 IPR001320 GO:0015276|GO:0016020
Lan18g0078 974 PANTHER GLUTAMATE RECEPTOR 44 964 - -
Lan18g0078 974 PIRSF IGluLR_plant 34 973 IPR017103 -
Lan18g0078 974 SUPERFAMILY Periplasmic binding protein-like II 482 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0078 Lan-Chr18 581174 586628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0078 40 950 Ion Channels AT3G51480 59.211 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0078 K05387 - gmx:100788917 1565.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0078 18 581174 586628 Lan6g0410 6 3290733 3295195 LSH
Lan18g0078 18 581174 586628 Lan17g1235 17 20663431 20668696 LSH
Lan18g0078 18 581174 586628 Lan18g0078 18 581174 586628 PCT
Lan18g0078 18 581174 586628 Lan17g1235 17 20663431 20668696 PCT
Lan6g0410 6 3290733 3295195 Lan18g0078 18 581174 586628 PCT
Lan18g0078 18 581174 586628 Lan6g0410 6 3290733 3295195 PCT
Lan17g1235 17 20663431 20668696 Lan18g0078 18 581174 586628 PCT