Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0077 ATGACTCGCACACTTAGAATCCTCCATTCAATTAACAGCACCACGGCGTCGCCGCCGCCGGAGACAGTGTCGGCGGAATCAGATTATGTCGTGATCCTAGCGGCCCTGCTTTGCGCCCTCGTCTGCGTAGTTGGCCTAATTGCCGTCGCTCGCTGCGCCTGGCTACGCCGTGGCTCCGGCACCGGCGCTACAGCAAACTCTCCGGCACCGGCGCTCGCAAACAAAGGCCTCAAGAAGAAGGTTCTCAATTCACTTCCCAAGTTCACCTATCTCGAAAGCGACGCCGGCGGCGACAAAAGGAACAAGTGGGTAGCAATATCGGAGTGCGCGATTTGCTTATCGGAGTTTTCCGCCGGCGACGAGGTACGGGTACTTCCGCACTGCGGCCACGGGTTCCACGTGGCGTGCATCGACCCTTGGCTTGGGTCACACTCTTCTTGCCCTTCATGCCGTGATCTCCTTGCTCCGGCGAGGTGCCGGAAATGTGGTCATTTTCCGGCAGTTTCTGCCGGAACCGTCGCTATTGATGTTAGTCACGAAACAGAGTTGAAATCCGTAGATTGCGACAATAATAGTTCCGTTGCTAATGATAATTGTGATGCTTTTGGTAAGGTGCTGAGTCATCATCATAGTCACAGTGTTAATAATGGTTTCTTGGCATGA 663 0.5445 MTRTLRILHSINSTTASPPPETVSAESDYVVILAALLCALVCVVGLIAVARCAWLRRGSGTGATANSPAPALANKGLKKKVLNSLPKFTYLESDAGGDKRNKWVAISECAICLSEFSAGDEVRVLPHCGHGFHVACIDPWLGSHSSCPSCRDLLAPARCRKCGHFPAVSAGTVAIDVSHETELKSVDCDNNSSVANDNCDAFGKVLSHHHSHSVNNGFLA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0077 220 SMART ring_2 109 150 IPR001841 -
Lan18g0077 220 SUPERFAMILY RING/U-box 81 156 - -
Lan18g0077 220 Pfam Ring finger domain 108 151 IPR001841 -
Lan18g0077 220 CDD RING-H2_PA-TM-RING 108 151 - -
Lan18g0077 220 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 194 - -
Lan18g0077 220 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lan18g0077 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 156 IPR013083 -
Lan18g0077 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0077 Lan-Chr18 578277 579163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0077 1 192 C3H Transcription Factor Family AT1G20823 54.000 1.33e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0077 - - gmx:100787383 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0077 18 578277 579163 Lan6g1511 6 22173524 22174222 LSH
Lan6g1511 6 22173524 22174222 Lan18g0077 18 578277 579163 LSH
Lan18g0077 18 578277 579163 Lan6g1511 6 22173524 22174222 PCT
Lan18g0077 18 578277 579163 Lan18g0077 18 578277 579163 PCT
Lan6g1511 6 22173524 22174222 Lan18g0077 18 578277 579163 PCT