Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0070 ATGGATTCTAGTGCGAATGAGCGTGTCACGGTTCGAGAGTTCTGTGCAAATGGAAGCTCTATGGCAACAACAGAAGTTGAGGCCAAGCTTGATGAAGGGAACATTCAAGAAGCAGAATCGGCATTGCGAGAAGGGTTGTCACTCAATTACGAGGAAGCAAGAGCTCTTCTCGGAAAGTTAGAGTATCAGAGAGGTAATGTTGAAGGTGCACTCCGTGTGTTCGACGGGATTGATCTGCAAGCAGCTATACAGCGACTGCAGCCTTCTCTTTCTGAAAAGTCACCAGTCAAGAAAGGTCCCACTCGCACTGATTCACCTTCATCGGTCTCTCAACATGCTGCTAGTTTGGTACTTGAAGCCATCTACTTAAAATCCAAATCTCTACAAAAACTGGGGAAATTTACTGAAGCTGCTAATGAATGCAAGCGTGTTCTCGATGCTGTTGAGAAAATATTTTATCAGGGTATATCTGATATTCAAGTGGACAATAAATTGCAAGAGATAGTAAGCCATGCTGTAGAGCTTCTTCCCGAGCTTTGGAAATATGCTGGTTGTTATGACGAGGCAATGTCTGCTTATAGGCATGCACTTCTTAGTCCGTGGAACCTTGATAATGACTACTCTGCAAGAATACAGAAAGCCTTTGCTGTGTTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCGAGTTTAGCAGTTCAAGTTGAAGGATCTTATGTACCTAAAAATAATTTGGAAGAAGCGATCCTGCTTCTAATGATTCTTTTACAGAAGTTTAGCCTTGGTAAGATAAAATGGGATCCTTCAATTATGGAACACCTGACATTTGCACTTTCAGAATGCGGCCAAACTTCCATTTTAGCAAAGCAACTTGAGGAGTTGCTTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCTGGACAAAACACGAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACATGAACGACCGGATGACCTTATATCATTGTTATTGGCTGCCAGGATTTGCAGTGAGGACCCTCATCTTGCTGCTGAGGGGACAGGCTATGCACAGAGGGCAATTAACAATGCTCATGGCCTACATGAGCATTTAAAAGGCGTGTCTCTTCGGATGTTAGGACTTTGCCTTGGAAAGCAAGCTATGGTTGCTTCCTCTGACTTTGAGAGGTCTCATCTTCAGTCCAAAGCTCTGCAATCATTGGAGGAGGCAGCTAGAATGGAGCAAAACAACTCTGATCTAATTTTTGAGTTGGCTGTTCAATGCGCAAAACACCGAAATTTGTCCGCTGCTTTACGCTATGCCAAGCAGTTCTTTGACAAAACTGGTGGCTCTGTATTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCGCAAAAAAGATACGCAGAGGCTGAAGTGGTGACCGATGCTGCTTTAGATGAGACTGCAAAATGGGAACAGGGGCCACTACTCAGGCTGAAAGCGAAGCTGAAGATCTCCCAATCACGACCCATGGATGCTATCGAAACTTATCGTTATCTTCTTGCATTGGTTCAAGCCCAGAGAAAATCCTTTGGGCATCTCAGAATTAGTTCACAGATTGAGAACGATAAAGTAAATGAATTTGATGTTTGGCATGATCTGGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGGGAGTTGAAGGAGTACTCGGCAGCTGTAATACACACCGAAGGAATTCTGTTTGACGGTCGTGGACAAAATCAGGAAGCTCTTGCTGCCACTGCCAATGCTGTCCTACTAGAATCAAATTATGCTCCAAGCAAGATCTCAATGGGCGCTTTGATGCTTAAAATGGGTTCAAAGGCTTTGCCTGCTGCTAGAAGCTTAGTTTCCGATGCACTTAGAATAGAACCCACCAACCGCATGGCTTGGTATTACTTGGGATTGATTCACAAGCACGATGGCCGAATAGGTGACGCCGCAGATTGTTTCCAAGCAGCTTCCATGCTCGAAGAATCAGATCCCACTGAAAACTTCAGCAATATACTTTGA 2085 0.4398 MDSSANERVTVREFCANGSSMATTEVEAKLDEGNIQEAESALREGLSLNYEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKSPVKKGPTRTDSPSSVSQHAASLVLEAIYLKSKSLQKLGKFTEAANECKRVLDAVEKIFYQGISDIQVDNKLQEIVSHAVELLPELWKYAGCYDEAMSAYRHALLSPWNLDNDYSARIQKAFAVFLLYSGVEASPPSLAVQVEGSYVPKNNLEEAILLLMILLQKFSLGKIKWDPSIMEHLTFALSECGQTSILAKQLEELLPGVYHRIDRWNSLALCHSGAGQNTSALNLLRKSLHKHERPDDLISLLLAARICSEDPHLAAEGTGYAQRAINNAHGLHEHLKGVSLRMLGLCLGKQAMVASSDFERSHLQSKALQSLEEAARMEQNNSDLIFELAVQCAKHRNLSAALRYAKQFFDKTGGSVLKGWRLLALVLSAQKRYAEAEVVTDAALDETAKWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQRKSFGHLRISSQIENDKVNEFDVWHDLANLYASLSHWKDAEICLQKARELKEYSAAVIHTEGILFDGRGQNQEALAATANAVLLESNYAPSKISMGALMLKMGSKALPAARSLVSDALRIEPTNRMAWYYLGLIHKHDGRIGDAADCFQAASMLEESDPTENFSNIL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0070 694 SUPERFAMILY TPR-like 543 678 IPR011990 GO:0005515
Lan18g0070 694 Gene3D Tetratricopeptide repeat domain 203 533 IPR011990 GO:0005515
Lan18g0070 694 SUPERFAMILY TPR-like 30 478 IPR011990 GO:0005515
Lan18g0070 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Lan18g0070 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Lan18g0070 694 SUPERFAMILY TPR-like 118 487 IPR011990 GO:0005515
Lan18g0070 694 MobiDBLite consensus disorder prediction 90 109 - -
Lan18g0070 694 Gene3D Tetratricopeptide repeat domain 534 688 IPR011990 GO:0005515
Lan18g0070 694 Pfam Tetratricopeptide repeat 28 75 - -
Lan18g0070 694 Gene3D Tetratricopeptide repeat domain 24 202 IPR011990 GO:0005515
Lan18g0070 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Lan18g0070 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Lan18g0070 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Lan18g0070 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Lan18g0070 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Lan18g0070 694 SMART tpr_5 302 335 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0070 Lan-Chr18 515393 520200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0070 3 694 Calmodulin-binding Proteins AT2G43040 72.662 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0070 K21843 - gmx:100811897 1132.09