Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0051 ATGGATCCTGGTCGCTACGGAATGCATCAAGGCTGGGATGATAACAACAGCGCTCCTGAGGGTTATGCTGCGGTCCATGAGCCAAATTTTCGGGTTGGAGGTTCTTATGATGAAAGGCGGTTTATAGATGAAAGATATCCAAGGGATGCTGGATACCGGAGAAATAGTTTCCATCGTGACATTTTGGATAGGGAGGCCTATCTGCCACCAGGACCTGCTGTTGGTGAGTGGAGTCAGTCGAAACGGAGAGGTTACGATGAAGATTACCCACTCGACAAGGAATCTAGACGTTTTCAGAGGCCTTATCATGAATCATATAATCAGGTTGATGCTTTTGAGGATCGTGAGATTGACACATACCCAGAACGTGATAAGTTCCAGGATGGCTATGCCAGCATTGATAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGCAGGGCATGACCGCAATGATTATGAGTATGATGATTATGGCTACAAATCCCGCATTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGCCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAACCGTAAGCAGCATGAATCCCGTGATCGGGAACGTGATAAAAGAGATCTTAGTCGGGAAAAGGATTTGAGTCCACATAGGAGGCATGAGCGTTCCCGTTCTCGATCACGGTCCCAATCCAATTCCCGTTCCCTTTCCCGTTCCCAGTCTCGTGGATATGATTATGATGATCATCCAAGATCGAAGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATCGAGAAGACAGCTATGTTGACAGTCGATATGACAGAAGTGAAAGACATAGGGATCGTGATGACAAACATCATCGTGAACATTATTCTGTGGCCCCATCTGCAACTATTGTTGTTAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTATGTGGGAGCTGCACAAGGAATGATGGAAAAACTAGGAGATGATGGTCTTATTGTGGATGGCAGAAAGCTTTTCTTTGAATACAGTAGTAAGCCAACTGGAGGTCCAGGTCCAGATGGAGCTATAAAATCAGGTCATAATCATAAGAGCATGACATTACCATCTGATTGGATATGCACTATATGTGGCTACATCAATTTTGCACGTCGGACTTCCTGCTACCAGTGTAATGATCCACGAACAGAGGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAACTGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCGACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGGGATGCTCCGCTATGAGTTTTCCAAACATGCTCCTATTAAGGATCTGCGTCTTGTCAGGGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTCATTCGGTGGAGGATGCTACCAAAGCTCTTGTGGCAACAAATGGAACAACCCTCGAGAGGAATGGGCAAATTCTAAGAGTAGCATATGCAAAAAGTATCATGGGCCCTGGATCAGGAGCTTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAACAGTATGACACTGTGGGATGGGCTCCAAAAGAATATAATCCAGATGACAAACAATCTGCTGGTCCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTCTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGGAACACTGGTCTGTATTATGATGGTAATAATGGGATTTGGTATTCATATGACAATCAAACTCAGCAGTACATCCCTTGCACTGACCAAAATCAGAATAAAACAGCTAATAACCTGTCTGAACCGTCCAAAGCATCTGATGGTTCCAGCAGTAAAAAGGTGGTGATTTCTGCGACAGCAACTACCGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAGCAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGACTACTCGAGTGGCTCTGGAAGATAATCAACTCTCTGTTTCAGCTGATGATAAATATTCTTCAGGACATTCTGCAATGAATAAGTTAAAAAATGAGACTATTGCAAGGGAAAGTAATGCATCATCTACTTTAGGAATTCATACAAGTGTTACCCAGGCTGTTGCTTTGGATTCTCAGCCTCAGCCCCGGCCAGTTAGTAATAGCCTTGGGGGCTCTTTGATGGGGGTTATAAGGGGCTCGGGAAGAGGGGTTGTTAAATCAGATACTTATTCGGGTTCTGCAGCTGTGGCATCGTCTATGTCAGGTTCTTTAGCAAACATTGATGCACAGACAATTTCAACTCCCTTTAGAACAGATGTCTCTGCCTTGAGTTCACATACACCATCTGTGGCTTCTATAAGTGGCAGAAGAAGGTTTTCAGAAATGCCCAATTCTGCTTCAACTCACAAGGAACAATCTCAAACAACCTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGGAATGATATGTCTGACCTTGAAATTGGGGGTTCAAATCGAGAATTTGCATCGAGGAAGGGTGATCCGATGCCTTTCCCTCCCGGGGTTGGTGGAGGGCGTGTGGTTGGAGATGTCAACCTTGATACTTTTGAGGTGATTACGGCTGACAAAGCAATTGATGAAAACAATGTTGGCAACCGGATGCTTCGCAACATGGGATGGCAAGAAGGCTTGGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCTGTCCAAGCACAAGCCATGGAAAACAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGATCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGATTTCGGGAAATGTAA 3165 0.4487 MDPGRYGMHQGWDDNNSAPEGYAAVHEPNFRVGGSYDERRFIDERYPRDAGYRRNSFHRDILDREAYLPPGPAVGEWSQSKRRGYDEDYPLDKESRRFQRPYHESYNQVDAFEDREIDTYPERDKFQDGYASIDNYGDRGYDKPARFAGHDRNDYEYDDYGYKSRISHHRREDSHERDYDHGRHSYDSDYERGSRRDSNRKQHESRDRERDKRDLSREKDLSPHRRHERSRSRSRSQSNSRSLSRSQSRGYDYDDHPRSKSPRGRSHGRSYREDSYVDSRYDRSERHRDRDDKHHREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPYVGAAQGMMEKLGDDGLIVDGRKLFFEYSSKPTGGPGPDGAIKSGHNHKSMTLPSDWICTICGYINFARRTSCYQCNDPRTEDAPAADISSSNSTALGKKGLEAGPTHVLVVRGLDENADEGMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALVATNGTTLERNGQILRVAYAKSIMGPGSGASQSSSLAAAAIEAATFSQQYDTVGWAPKEYNPDDKQSAGPEQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKTANNLSEPSKASDGSSSKKVVISATATTVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQTTRVALEDNQLSVSADDKYSSGHSAMNKLKNETIARESNASSTLGIHTSVTQAVALDSQPQPRPVSNSLGGSLMGVIRGSGRGVVKSDTYSGSAAVASSMSGSLANIDAQTISTPFRTDVSALSSHTPSVASISGRRRFSEMPNSASTHKEQSQTTYRDRAAERRSLYGSSSSVGNDMSDLEIGGSNREFASRKGDPMPFPPGVGGGRVVGDVNLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0051 1054 MobiDBLite consensus disorder prediction 653 675 - -
Lan18g0051 1054 CDD OCRE_SUA_like 598 650 IPR035623 -
Lan18g0051 1054 ProSitePatterns Zinc finger RanBP2-type signature. 411 430 IPR001876 -
Lan18g0051 1054 Pfam G-patch domain 980 1021 IPR000467 GO:0003676
Lan18g0051 1054 ProSiteProfiles G-patch domain profile. 979 1025 IPR000467 GO:0003676
Lan18g0051 1054 SMART G-patch_5 977 1023 IPR000467 GO:0003676
Lan18g0051 1054 MobiDBLite consensus disorder prediction 877 902 - -
Lan18g0051 1054 SUPERFAMILY RNA-binding domain, RBD 460 545 IPR035979 GO:0003676
Lan18g0051 1054 PANTHER FI21118P1 39 211 - -
Lan18g0051 1054 PANTHER FI21118P1 222 1054 - -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 916 930 - -
Lan18g0051 1054 ProSiteProfiles Zinc finger RanBP2 type profile. 407 436 IPR001876 -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 1 22 - -
Lan18g0051 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 542 IPR000504 GO:0003723
Lan18g0051 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 385 IPR000504 GO:0003723
Lan18g0051 1054 PANTHER RNA-BINDING PROTEIN 39 211 - -
Lan18g0051 1054 PANTHER RNA-BINDING PROTEIN 222 1054 - -
Lan18g0051 1054 SUPERFAMILY RNA-binding domain, RBD 301 395 IPR035979 GO:0003676
Lan18g0051 1054 MobiDBLite consensus disorder prediction 877 950 - -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 575 601 - -
Lan18g0051 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 530 IPR000504 GO:0003723
Lan18g0051 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 366 IPR000504 GO:0003723
Lan18g0051 1054 CDD RRM1_RRM2_RBM5_like 303 383 - -
Lan18g0051 1054 CDD RRM1_RRM2_RBM5_like 460 540 - -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 248 298 - -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 68 298 - -
Lan18g0051 1054 Gene3D - 442 591 IPR012677 -
Lan18g0051 1054 Gene3D - 269 403 IPR012677 -
Lan18g0051 1054 Gene3D - 404 437 - -
Lan18g0051 1054 SMART zf_4 409 433 IPR001876 -
Lan18g0051 1054 SUPERFAMILY Ran binding protein zinc finger-like 401 437 IPR036443 -
Lan18g0051 1054 Pfam OCRE domain 601 649 IPR041591 -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 80 129 - -
Lan18g0051 1054 MobiDBLite consensus disorder prediction 139 227 - -
Lan18g0051 1054 SMART rrm1_1 306 381 IPR000504 GO:0003723
Lan18g0051 1054 SMART rrm1_1 463 538 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0051 Lan-Chr18 356298 362881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0051 304 526 Eukaryotic Initiation Factors Gene Family AT2G36660 25.600 4.24e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0051 K13094 - gmx:100777686 1651.34