Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0043 ATGGATGCTCCGATCAACGGCGGAGGCGGTGACGGCGCCACCAATTCATCGGCGACAACGCCGACTCCGATGCCAAATCCAAACGCGCCACCGCCGTTCCTGAGCAAGACGTATGATATGGTGGATGAGGCTTCAACGGATTCGATTGTTTCATGGAGCGCAACGAATAACAGCTTCGTGGTTTGGAATCCACCGGAGTTTGCGAGAGATCTCTTGCCAAAGCATTTCAAGCACAATAACTTCTCTAGCTTTGTTCGTCAGTTAAACACTTATGGTTTCAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAGAAGCACCTGCTTAAGAGTATAACTCGCCGAAAACCTGCCCATGGTCATAATCATCAACAGACACGGCAATCACATGGACAGAGCTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAGAAAGAGGTTGAGATTCTTAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAAGTTGAGGCAGCAACAGCAGGCTACTGAAAGTCAGCTTCAGACAATGGTTCAGTGCTTTCAGGGAATGGAGCAACGGCATCAAAAAATGATATCATTCCTTGCGAAGGCTGTCCAGAGCCCTGTGTTCTTTGCTCAATTCGTACAACAGAAAAATGAGAGTAATAGGCGTTTAGCTGATGCTAACAAAAAACGTCGGCTCAAGCAGGATGGTATTGCTGATATGGAACATTCCACTGCTTCTGATGGCCAGATTGTTAAATATCAACCTCAGATGAATGAAGCAGAAAAAGCAACGCTAAGGCAGATCATGAAATTGGACACTTCTAACAGTAGTAACCCTGATGATTACTTGATTGGTGATGGTTCATCATCACCCAGTACCATAGACAGGGGAAGCTCTTTGAACCGAACTTCTGGAGTAACTCTTCAAGAGGTCCCTCCAGCTATATTGCAGTCTTCTCACATTCCAGCAGCAATAGGGACTCAAGAGCATGCCCCGTCAAAAGGAACATCTGAATGCGTATCTTCTCCTCAAGTTGCAGCCTGTGAAAATGGTACAAAAGCTCAATACCCTGAAATAAACGATTTGCTTGCAGCGGCTGAGGTTCCCTCTATTCCGGTTTCTCAAACAGATACAATCATGCCTGATCTTTCTCCGATACCAGATACAGTGACAGGAAGCATTCTTGATATTCCTGACGAAATTTACATGGCACCCGAGACGAGCGGTGAGGGATATATGGATCCTACTTCATTTCCCATTGATTTTGATAGTATATCACCTGAAGCAGACATTGATGATCTGTTTAGAAATCCTTCCTTTTGGGATGATATTGTACAAACTCCAATGGCAGAGGATATTGATATCAACATTGAAGAATTGCTCAAGGACAATGAGCTGCACCCAACAGAAAATGGATGGGACAAATCTCAACATATGGACCAACTTACAGAACGAATGGGACTTCTTTCTCCTGATACAAAAGGATTTTGA 1515 0.4455 MDAPINGGGGDGATNSSATTPTPMPNPNAPPPFLSKTYDMVDEASTDSIVSWSATNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNHQQTRQSHGQSSSVGACVEVGKFGLEKEVEILKRDKNVLMQELVKLRQQQQATESQLQTMVQCFQGMEQRHQKMISFLAKAVQSPVFFAQFVQQKNESNRRLADANKKRRLKQDGIADMEHSTASDGQIVKYQPQMNEAEKATLRQIMKLDTSNSSNPDDYLIGDGSSSPSTIDRGSSLNRTSGVTLQEVPPAILQSSHIPAAIGTQEHAPSKGTSECVSSPQVAACENGTKAQYPEINDLLAAAEVPSIPVSQTDTIMPDLSPIPDTVTGSILDIPDEIYMAPETSGEGYMDPTSFPIDFDSISPEADIDDLFRNPSFWDDIVQTPMAEDIDINIEELLKDNELHPTENGWDKSQHMDQLTERMGLLSPDTKGF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0043 504 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan18g0043 504 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 5 490 - -
Lan18g0043 504 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 490 IPR027725 -
Lan18g0043 504 Coils Coil 158 185 - -
Lan18g0043 504 MobiDBLite consensus disorder prediction 122 141 - -
Lan18g0043 504 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Lan18g0043 504 MobiDBLite consensus disorder prediction 280 308 - -
Lan18g0043 504 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan18g0043 504 Gene3D - 26 123 IPR036388 -
Lan18g0043 504 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan18g0043 504 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan18g0043 504 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan18g0043 504 MobiDBLite consensus disorder prediction 1 34 - -
Lan18g0043 504 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0043 Lan-Chr18 301391 303855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0043 11 501 HSF AT1G32330 51.373 2.31e-164 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan18g0043 HSF_DNA-bind 4.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0043 K09419 - gmx:732544 712.99