Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0042 ATGAAGAAACCAGTTTTGTTGCTATGGCAGTTTGGAATGACAATGCATCTCTTCTTGCTCGTTGCATGTTGCGAGAAGACACTATTTAGTTGTTATATTTTTCAGTTGATAGTTGATAATGGCATAGTTAAAGTGACATTATCAATTCCAGAGGGTTATGTCATTGGAATATCATATAATGGAATTGATAATATACTTAATACTGAAGACAGGGAACAAAATAGAGGCTATTTGGACGTTAATTGGAATAATGTACCATCAAAAGACTCAAAATATCAGAGAATATTTGGGACACAATTTTCCACCATAATAGCTAACAATGATGTGGTAGAAGTTTCATTTTTAAGAACATGGAAATCTTCAATGAATGGTGCAAGTGTCCCCTTCAACATAGATACAAGGTATATTTTTCGAAGAGGTGATTCTGGATTTTATTCATACGCAATATTTGATCGTCCTGAAGGATTATCAGCAGTAGAAGTTGATCAAATTAGGATTGTTTTCAAGCTACAGAAAAATAGGTTCAAGTATATGGCTATAGCAGATAAGAGGCAAAGAAAGATGCCAACATTGAAAGATAGAGAAACTGGTCAAACTTTGGCATATCCTGAAGCAGTTCTATTAACCAAACCAAGTGATCCAAAATTTATAGGGGAGGTGGATGATAAATACCAATATTCAAGTGAGAACAAAGACAACTATGTACATGGTTGGATTGATGTTGATTCTAATGCATCAATAGGTTTTTGGATGATAACTCCAAGTAATGAGTTTCGTAATGGTGGACCAATTAAGCAAGATCTAACTTCACACGTTGGACCCATTACCCTAAGTATGTTTGTGAGCACCCACTATGCTGGTAAAGAGGCAACAATGGCATTTAAAGAAGGGGAGACATATAAGAAGGTTTTTGGTCCTGTTTTTGTTTACCTTAACTCTGCTTCAACCACAAAACAATCACTCTCTCTTTGGTCAGATGCTGTGCAACAGAAATCCAAGGAAGTAGAAAAATGGCCATATGATTTTCCTCATTCAAAAGATTTCTTTCCATCCAATAAACGTGGAACAATAATGGGAAGATTAAGAGTCCAAGATAGTTCCATCAAGGTAGTAAGAGGGGCTAATAATGCTTATGTTGGTTTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAAAGAAAGCAAGGGCTATCAATTCTGGACACGAGCTGACCAAGTTGGAAACTTTGCAATAAAAAATATTGTACCTGGAGTTTATAATTTATATGCATGGGTTCCTGGCTTCATTGGTGATTACAAATATAATGCTACAATTACCATTAAACCAGGAGGAGACATCGATTTTAAGGACCTACTATATAATCCTCCAAGAAATGGACCAACTCTTTGGGAAATAGGAATCCCAGATCGCTCAGCTGCTGAATTTTATGTACCAGACTCTTATCCTAACCTAGTGAACAAATTATATCAAGGAGAATCCAAAGAGAAGTTTAGGCAATATGGGTTATGGTCACGTTATACTGATTTATACCCAAAGCATGATCTAGTATACACTATTGGTGTTAACAACTTTACTAAGGATTGGTTTTATGCTCATGTTCCAAGAGACACAGGAAAAAACACATATTTGCCAACAACATGGGAAATTATATTTGAACATCAACATGATATTATTGGTGGAAATTACACACTACAACTAGCCTTGGCAAGTGCTGCTGAAGCTGAACTAGAGGTTAGGTTCAATAACCCTAGTGTGAATCGACCCCATTTTAGCACAGGACTAATAGGTGGAGATAATGCCATTGCAAGACATGGAATCCATGGATTGCATCGACTATTCAGCATTGGTGTTCCAAGTAGTAATTTTGTGAAAGGAAAGAATATTATCTATTTGAAGCAGATAAAAACCAAAGATCCTTGGCAAGGAGTTATGTATGATTACATTCGATTAGAAATGCCTTCCACTTCATAA 1971 0.3623 MKKPVLLLWQFGMTMHLFLLVACCEKTLFSCYIFQLIVDNGIVKVTLSIPEGYVIGISYNGIDNILNTEDREQNRGYLDVNWNNVPSKDSKYQRIFGTQFSTIIANNDVVEVSFLRTWKSSMNGASVPFNIDTRYIFRRGDSGFYSYAIFDRPEGLSAVEVDQIRIVFKLQKNRFKYMAIADKRQRKMPTLKDRETGQTLAYPEAVLLTKPSDPKFIGEVDDKYQYSSENKDNYVHGWIDVDSNASIGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEATMAFKEGETYKKVFGPVFVYLNSASTTKQSLSLWSDAVQQKSKEVEKWPYDFPHSKDFFPSNKRGTIMGRLRVQDSSIKVVRGANNAYVGLALPGDAGSWQKESKGYQFWTRADQVGNFAIKNIVPGVYNLYAWVPGFIGDYKYNATITIKPGGDIDFKDLLYNPPRNGPTLWEIGIPDRSAAEFYVPDSYPNLVNKLYQGESKEKFRQYGLWSRYTDLYPKHDLVYTIGVNNFTKDWFYAHVPRDTGKNTYLPTTWEIIFEHQHDIIGGNYTLQLALASAAEAELEVRFNNPSVNRPHFSTGLIGGDNAIARHGIHGLHRLFSIGVPSSNFVKGKNIIYLKQIKTKDPWQGVMYDYIRLEMPSTS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0042 656 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Lan18g0042 656 Pfam Polysaccharide lyase family 4, domain II 375 446 IPR029413 -
Lan18g0042 656 Pfam Rhamnogalacturonate lyase family 35 220 IPR010325 -
Lan18g0042 656 Gene3D - 349 448 - -
Lan18g0042 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 30 655 - -
Lan18g0042 656 SUPERFAMILY Starch-binding domain-like 349 448 IPR013784 GO:0030246
Lan18g0042 656 CDD RGL4_C 463 651 - -
Lan18g0042 656 Pfam Polysaccharide lyase family 4, domain III 461 650 IPR029411 -
Lan18g0042 656 Gene3D - 459 651 - -
Lan18g0042 656 CDD RGL4_N 35 320 - -
Lan18g0042 656 CDD RGL4_M 353 451 IPR029413 -
Lan18g0042 656 Gene3D - 34 329 IPR014718 GO:0030246
Lan18g0042 656 SUPERFAMILY Galactose-binding domain-like 458 651 IPR008979 -
Lan18g0042 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 30 655 - -
Lan18g0042 656 SUPERFAMILY Galactose mutarotase-like 44 320 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0042 Lan-Chr18 286786 294919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0042 36 655 Polysaccharide Lyase AT1G09910 53.291 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0042 K18195 - gmx:100776664 926.391