Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0019 ATGGATCTCAAGAAGGAGAAAAATGATACAAAAAATGATTCTTCTTCTTCTTCTGGTATAGCAAAGTTTTCAGCATCCAAAACAAGCAAAAATAATCCAAAGAAGCATTTCAATAACAGTAACAATGACTCTCCTTCTCCAAAGGATTCACCTCCAACACCAAACCCTAATGACAAATCAGTTTCTCCAGAACGTGCTCCGTTGAAACCCCCACCTTCTCCACCACCACCACCACCGGTGTTGTTGAAGTCTCCACCACCACCCTCATTACCACCACCTTCATTACCACCACCCTCTCAACCACCTCTACCCTCTTTGCCACCACCATCATCGCCTCCTCCTCCACCATTACCCTCTCCACCGCCACCACTACCTGCTTCTCCACCACCACCACCACCCTCTCCTCCGCAACGGGCACCACCACAACTATCACCTCCACCACCACGGTCCCAGACAAACAATTCTTCTTCTCCTTCTCCTGCTCAAAATAAACCTCCTCCTCCTCCTCCTCCTCCTTCACCACCCTCACGTAAGGATGCACCTTCAAATGATTCTTCAACCAAGTCACCTTTCTCCGCGGTAGTTCCAACACCTCCAGGGTCAAAAAACCAAACCACGCAAGGTGGTGGTGGTGGTAGTGGGTCCCATGCAAAATCAGGTGGTTCTTCTTCTTCTTCTCAAGCTTCCTCAGGTGGTGATAATAGTCCAGGAAAATATGTTGGTTATGCACTTGCTGGGGTTTTTGTTCTTGGTTTAGTTGCTTTAGCATTGTTTTTCACGTATAGGAGGAAGAAAACAAAAGGGGATTCCTTTGTTGCAACCTACATTCATGCAAAATCAGGTACTAATATGCAATACTATGCACAGAAGCCAAAATCTCCACATGGAAACAACTACGGAAATGGGAGCATGAAACATATAGGAGGAGGTTCTTTAGACACAGCTCAGCCCAAAAGTGCTCAAATAGCTTTTACCTATGACATGGTTATGGAAATGACCAATGCATTTTCTAGTGAAAATGTTATAGGTGAAGGTGGATTTGGGTGTGTTTACAAGGGTTGGCTACTTGGTGGAAGAGCAGTTGCAGTTAAGCAACTTAAAGCTGGAAGTGGACAAGGAGAAAGGGAATTTCAGGCTGAAGTTGAGATTATAAGTCGTGTTCATCATCGCCATTTGGTGTCATTAGTTGGTTATTGCATATCTGAGCAGCAAAGAATGCTTATCTATGAGTTTGTTCCTAATGGAACACTCCATCATCACTTGCATGGAAGTGGAATGCCAGTTCTGGATTGGGCCAAGAGGCTGAAGATAGCAATTGGAGCTGCAAAAGGATTAGCATATTTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCAGCAAATATACTTTTGGACAATGCTTTTGAAGCACAGGTTGCAGACTTTGGACTTGCAAAGCTAGCAGATGTTGGTAATACCCATGTATCAACTAGGGTTATGGGGACCTTTGGATACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACTGATAGATCAGATGTTTTTTCATTCGGGGTTGTCCTCCTTGAGCTTGTAACTGGAAGAAAACCAGTGGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGACCACTTCTCATTCATGCCATTGAGACACATGACATTAGTGAATTAACAGATCCAAGGCTTCAAAAGCACTATGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCCGCAGCATGTGTTCGCCACTCCGCTCCTAAACGGCCTCGAATGGTTCAGGTGGTAAGGGCCTTAGATAGTGGAGATGATATATTTGATCTAACAAATGGAGTAAAATATGGTCAGAGCACTGTTTATGATTCTGGGCAATATGATAAAGATATTATGCTATTCAGGAGAATAGCCAATGGTAGTTTTGTTGATTCTGATTCAGATATGTACAGTATAGAATATGGTTATTCAAGACAAACCTCTGGAACTCAACATGCATGGATGCGAAGTGGTTCGAGTGGCAATCCGAATCGAAAGCTTTCAACAGCCATCAAAGCAGTAGTGGATGAACACATAAAGGAGTTGGAGGCTAATGGTTTTAGTCTCTAA 2133 0.4351 MDLKKEKNDTKNDSSSSSGIAKFSASKTSKNNPKKHFNNSNNDSPSPKDSPPTPNPNDKSVSPERAPLKPPPSPPPPPPVLLKSPPPPSLPPPSLPPPSQPPLPSLPPPSSPPPPPLPSPPPPLPASPPPPPPSPPQRAPPQLSPPPPRSQTNNSSSPSPAQNKPPPPPPPPSPPSRKDAPSNDSSTKSPFSAVVPTPPGSKNQTTQGGGGGSGSHAKSGGSSSSSQASSGGDNSPGKYVGYALAGVFVLGLVALALFFTYRRKKTKGDSFVATYIHAKSGTNMQYYAQKPKSPHGNNYGNGSMKHIGGGSLDTAQPKSAQIAFTYDMVMEMTNAFSSENVIGEGGFGCVYKGWLLGGRAVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCISEQQRMLIYEFVPNGTLHHHLHGSGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDNAFEAQVADFGLAKLADVGNTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLIHAIETHDISELTDPRLQKHYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDSGDDIFDLTNGVKYGQSTVYDSGQYDKDIMLFRRIANGSFVDSDSDMYSIEYGYSRQTSGTQHAWMRSGSSGNPNRKLSTAIKAVVDEHIKELEANGFSL* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0019 710 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Lan18g0019 710 MobiDBLite consensus disorder prediction 179 234 - -
Lan18g0019 710 SMART serkin_6 336 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0019 710 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
Lan18g0019 710 MobiDBLite consensus disorder prediction 1 234 - -
Lan18g0019 710 PRINTS Proline rich extensin signature 45 61 - -
Lan18g0019 710 PRINTS Proline rich extensin signature 75 92 - -
Lan18g0019 710 PRINTS Proline rich extensin signature 97 122 - -
Lan18g0019 710 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 62 681 - -
Lan18g0019 710 Gene3D Phosphorylase Kinase; domain 1 308 411 - -
Lan18g0019 710 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 62 681 - -
Lan18g0019 710 MobiDBLite consensus disorder prediction 13 46 - -
Lan18g0019 710 MobiDBLite consensus disorder prediction 160 178 - -
Lan18g0019 710 MobiDBLite consensus disorder prediction 65 153 - -
Lan18g0019 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Lan18g0019 710 Pfam Protein tyrosine and serine/threonine kinase 339 608 IPR001245 GO:0004672|GO:0006468
Lan18g0019 710 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Lan18g0019 710 ProSiteProfiles Protein kinase domain profile. 336 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0019 710 CDD STKc_IRAK 342 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0019 Lan-Chr18 149902 158872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0019 228 674 Trihelix Transcription Factor Family AT1G70460 61.752 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lan18g0019 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0019 - - lang:109330554 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0599 17 5025477 5031870 Lan18g0019 18 149902 158872 LSH