LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan18g0010	ATGGCTGTGGATAAAGTTGGTAGTAGCTCTGAGTGGAGCTTAGAGCAAGATAAAGCATTTGAAAATGCTTTGGCAACTCATCTTGAGGACGCTTCAGATCGATGGGAGAAGATTGTGGCCGATGTACCAGGGAAAACTTTAGAAGAGATTAAACATCACTATGAGCTATTGGTTGACGACATTAACCAGATCGAATCTGGTTGTGTGCCTCTGCCATCTTATCATTCTTCTCCCGAGGGCTCAACAAGCCATAGGAGCAATGAAGGAGCTGACAAGAAGGGAAGCAGTCTCTGGAATTATAACAATGAGTCTAATCCTAAGGTTTCAAAATCAGATCAAGAACGACGAAAGGGTATTGCCTGGACCGAGGAAGAACACAGGTTATTTCTTCTTGGTTTGGAGAAGTATGGAAAAGGTGATTGGCGAAGTATATCTAGGAACTTCGTGGTAACAAGAACACCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCCAGCATACATGATATCACAAGCGTGAACAACGGAGACGTTTCAGCAGCTCTAGGACCAATTACCAGTCAAACAAATGTTGCTTCTAGAAATTCTACTGGAAAACTAACCAAACAAGGCCCTCCAACCCGAACCGGAGCCTCGGTTGTAGGACTATATGGTCCTCCCACTGTAGGGCAGGCTATAGGAGGAGGACCCCTTGTATCTGCAGTTGGCACACCAGTGAATCTTCCTCCTCCTCATATGGCTTATGGTGTGCGAGCCCCGGTTCATGGCGCTGTTGTTCCCGGTGCAGCAATGAACTTTGGTCATATGCCATACCACATGCCACAGCCTCATAGATGA	876	0.4555	MAVDKVGSSSEWSLEQDKAFENALATHLEDASDRWEKIVADVPGKTLEEIKHHYELLVDDINQIESGCVPLPSYHSSPEGSTSHRSNEGADKKGSSLWNYNNESNPKVSKSDQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAALGPITSQTNVASRNSTGKLTKQGPPTRTGASVVGLYGPPTVGQAIGGGPLVSAVGTPVNLPPPHMAYGVRAPVHGAVVPGAAMNFGHMPYHMPQPHR*	292

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan18g0010	291	ProSiteProfiles	Myb-like domain profile.	10	58	IPR001005	-
	Lan18g0010	291	CDD	SANT	11	58	IPR001005	-
	Lan18g0010	291	CDD	SANT	120	165	IPR001005	-
	Lan18g0010	291	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	117	167	IPR006447	GO:0003677
	Lan18g0010	291	SUPERFAMILY	Homeodomain-like	10	66	IPR009057	-
	Lan18g0010	291	MobiDBLite	consensus disorder prediction	69	115	-	-
	Lan18g0010	291	SUPERFAMILY	Homeodomain-like	115	170	IPR009057	-
	Lan18g0010	291	Pfam	Myb-like DNA-binding domain	120	165	IPR001005	-
	Lan18g0010	291	ProSiteProfiles	SANT domain profile.	121	169	IPR017884	-
	Lan18g0010	291	ProSiteProfiles	Myb-like domain profile.	113	165	IPR001005	-
	Lan18g0010	291	Gene3D	-	4	71	-	-
	Lan18g0010	291	MobiDBLite	consensus disorder prediction	92	107	-	-
	Lan18g0010	291	Gene3D	-	119	171	-	-
	Lan18g0010	291	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	112	169	IPR017930	-
	Lan18g0010	291	PANTHER	HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED	7	281	-	-
	Lan18g0010	291	PANTHER	TRANSCRIPTION FACTOR KUA1	7	281	-	-
	Lan18g0010	291	SMART	sant	117	167	IPR001005	-
	Lan18g0010	291	SMART	sant	8	60	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan18g0010	Lan-Chr18	95109	99211	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lan18g0010		Myb_DNA-binding	5.7e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan18g0010	-		-	gmx:100819797	448.358