Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0003 ATGACTTTCTTCCAAGCAAATTTCATGCTACATCACCAAGATGACCATCATCATCAACCTCCTCTCCTCAACTCTATTCTAACCTCATCTACACCTCAATACTACAACAACCATGGTGGAGCGCATGCCTTTCTTGGGAAGAGATCTATGTCATTCTCAGGGATTGAAGTTGGAAGAGGAGGAGAAGACGGTAATAATAATAATAATAACAATAATAATGGTGAGGAATATATGTCAGATGATGATGGATCAATGGCTGGTGGAGAGAAGAAGAGGAGACTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTAGGGAACAAGCTTGAACCAGAGAGGAAAATGCAACTAGCAAGGGCACTTGGATTGCAACCTAGACAGGTTGCTATATGGTTCCAAAACAGGAGGGCTAGGTGGAAAACCAAGCAGTTGGAAAAAGACTATGATCTTCTTAAAAGACAATATAATGCTATTAAGGCTGATAATGAGGCACTTCAAGCTCACAACCAAAAACTTCAGTCCGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCAATAAATCTGAATAAAGAAACAGAAGGATCAAGCAGCATTAGAAGTGAGAACAGCTCAGAGATTAAGTTGGATATGTCAAGGACAACACTAGCTATTGAGAGTCCTCAGCAGCAAAGGATCCTCTTTCCATCATCCTCTGTTAGACCAGACCTTCCGCATTTTCAAACTACTAATTCAAAGATTGATCACATGGTGAAAGAAGAGAGCTTGAGCAACATGTTTTGTTCCATTGATGATCAATCTAGCCTGTGGCCATGGTTGGAGCACCAAAGTTTCAATTAA 852 0.4038 MTFFQANFMLHHQDDHHHQPPLLNSILTSSTPQYYNNHGGAHAFLGKRSMSFSGIEVGRGGEDGNNNNNNNNNGEEYMSDDDGSMAGGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYNAIKADNEALQAHNQKLQSEILALKSREPTESINLNKETEGSSSIRSENSSEIKLDMSRTTLAIESPQQQRILFPSSSVRPDLPHFQTTNSKIDHMVKEESLSNMFCSIDDQSSLWPWLEHQSFN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0003 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 283 - -
Lan18g0003 283 SUPERFAMILY Homeodomain-like 81 147 IPR009057 -
Lan18g0003 283 Gene3D - 83 151 - -
Lan18g0003 283 MobiDBLite consensus disorder prediction 193 209 - -
Lan18g0003 283 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lan18g0003 283 MobiDBLite consensus disorder prediction 190 209 - -
Lan18g0003 283 MobiDBLite consensus disorder prediction 55 90 - -
Lan18g0003 283 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Lan18g0003 283 SMART HOX_1 88 149 IPR001356 GO:0003677
Lan18g0003 283 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Lan18g0003 283 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Lan18g0003 283 MobiDBLite consensus disorder prediction 62 78 - -
Lan18g0003 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 283 IPR045224 GO:0003700
Lan18g0003 283 Coils Coil 137 185 - -
Lan18g0003 283 CDD homeodomain 90 146 IPR001356 GO:0003677
Lan18g0003 283 Pfam Homeobox associated leucine zipper 145 185 IPR003106 GO:0006355|GO:0043565
Lan18g0003 283 Pfam Homeodomain 90 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0003 Lan-Chr18 46847 48358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0003 1 283 Homeobox Transcription Factor Family AT1G69780 57.096 1.19e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan18g0003 Homeodomain 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0003 K09338 - gmx:100801479 367.851