Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1301 ATGGCCATAAGGCCCTTCCTCCAATTGAATTTCTCTCACAACTTTCTCTTCCGTTCTTCTCAATCTCTTCATTCTTTTCATTCTTCTCTTTTCAAACCATTCTTCCTCCGCCACCTCGCTTCTTCCTCCGCCGCACCTTCTCCGCCGCACGCTCACCACCTCCGCCGCACATTTCCACCTCCGCCCGACACCCTGGCGCACAAGATTGGGAAAGCCACGCGCCGCCCTGGCGCTCCATCAAAAGCTAGGGTTTATTCTGATGTTAACGTTGTTCGTCCTAAGGAATATTGGGACTATGAAAATCTCACTGTTCATTGGGGGGAACAAGATGATTATGAGGTGGTGAGGAAGGTGGGAAGGGGAAAATATAGTGAGGTGTTTGAGGGTGTTCACCTCACCGATAATGAAAAATGTGTAATCAAGATCCTGAAACCTGTCAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTGCAGAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCTTGACATCGTTAGAGATCAGCAGTCGAAGACCCCAAGCTTTATATTTGAATATGTTAATAACAACGACTTTAAAGTGCTATATCCTACATTGTCAGACTATGATATACGATATTATATCCATGAACTTCTAAAGGCACTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTGATGATTGATCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGCCTTGCTGAGTTCTATCATCCCGGACAAGAATATAATGTCCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCACTGGATTTATGGAGTCTTGGTTGTATGTTGGCGGGGATGATATTCCGTAAGGAGCCTTTCTTCTATGGGCATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTTCTTGGAACAGATGAACTAAATGCATATTTGAACAAATACCGCATAGAGTTGGACCCACATCTTGAAGCACTTGTGGGAAGGCATAGCCGGAAGCCATGGACAAAGTTCATTAATGTAGAAAATAAACACTTGGCGGTTCCCGAGGCCGTTGACTTTGTTGACAAGTTACTACGGTATGATCACCAGGAACGACCAACTGCAAAAGAAGCAATGGCCCATCCTTATTTCAATCCAGTCAGAAACGCAGGAAATAGCAGAACTCGTGCACATTGA 1236 0.4393 MAIRPFLQLNFSHNFLFRSSQSLHSFHSSLFKPFFLRHLASSSAAPSPPHAHHLRRTFPPPPDTLAHKIGKATRRPGAPSKARVYSDVNVVRPKEYWDYENLTVHWGEQDDYEVVRKVGRGKYSEVFEGVHLTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSFIFEYVNNNDFKVLYPTLSDYDIRYYIHELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMLAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPHLEALVGRHSRKPWTKFINVENKHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAGNSRTRAH* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1301 411 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Lan17g1301 411 Gene3D Transferase(Phosphotransferase) domain 1 189 397 - -
Lan17g1301 411 MobiDBLite consensus disorder prediction 391 411 - -
Lan17g1301 411 Gene3D Phosphorylase Kinase; domain 1 112 188 - -
Lan17g1301 411 SMART serkin_6 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1301 411 ProSiteProfiles Protein kinase domain profile. 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1301 411 SUPERFAMILY Protein kinase-like (PK-like) 83 400 IPR011009 -
Lan17g1301 411 PANTHER CASEIN KINASE II SUBUNIT ALPHA 63 403 IPR045216 GO:0004674|GO:0006468
Lan17g1301 411 PANTHER BNAA04G13490D PROTEIN 63 403 - -
Lan17g1301 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Lan17g1301 411 Pfam Protein kinase domain 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1301 411 CDD STKc_CK2_alpha 93 397 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1301 Lan-Chr17 21263775 21268917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1301 110 398 Core Cell Cycle Gene Families AT1G76540 29.747 3.55e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lan17g1301 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1301 K03097 - cit:102608753 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0257 18 3412870 3418541 Lan17g1301 17 21263775 21268917 LSH