Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1271 ATGTCTATTGATTTGGACAATGTTTCAACAACTTCAGGAGGAGAAGCTAGTGTCTCTTCTTCTGGTGTAAATCCTACAGAATCATCAAAACCCATCACCAAGAAAAAGAGAAACCTTCCAGGAATGCCAGATCCAGAGGCAGAGGTGATAGCTTTGTCACCGAAGACCCTTATGGCTACGAACCGATTCGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGACCAAAATCTTCAGCTTCATCAAAGGGGACACAACTTGCCATGGAAACTGAGGCAGAGGTCGAGTAATGAGGTTAAGAAGAAGGTTTATGTGTGCCCTGAACAAACTTGTGTTCACCATGATCCTTCAAGAGCTTTGGGGGATCTTACTGGGATCAAAAAGCATTTTTGTAGGAAGCATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCACTCTAAAGTCTGTGGAACAAGAGAGAATAAATGTGATTGTGGCACTTTGTTTTCCAGGAGGGATAGCTTTATCACGCATAGAGCTTTTTGTGATGCCTTAGCAAGGGAGAGTGCAGGATCTCAGACTGTTGCTGTAAATTCTAATTCACGGTCCGACTCGAAGGTTATAATGGGAGATTCGTTGCCACAATCGCCCGCAACTACTACTCAGTCAAATGCTGTGCAGACACAGAACCAAGATTTGCCTGAAAATCCACCACAAATCGGAGAAGTACAAGCTACTACTGTTTTAAATGGGAGTTGTAATGGTTGTGCAACTACTAGCAATAGTGTGTTCACAAGCTTGTTTGCTCCATCAACGATATCAACGAGTCTGCAATCTCAAACACCGGCATTTACTGGCCTAGTCAGGGCCATTGGATGTCCGGATCGTCCAGCAGACCACCCTGACCCTTCATCCTCCGATCCAATATCTCTCCGCATTTCCAACAATCACGGCTCATCAATTTTTGGAGCAGGAGTACAGGAGCAACATCAGTATGCCCCACCACCACAGCCAGCTATGTCGGCCACCGCATTGCTGCAGAAAGCTGCACAAATGGGTGCAGCTGCCACAAATGCCTCATTGCTTCAAGGATTTGGCGTTGTGTCATCTTCCACGACATCACACTCATCGAGTCAGCAACATAATTTGCAATGGAGTCATGGGCAGCAACTCGAACCATCCGAGAGTGGCTCATTACTTGCAGGACTTGGACTCGAACTTCCTTGTGATAATGGCTCTGGACTAAAGGAATTGATGATGGGAACACCCTCCTTCTTCAGTCCTAAGCAAACCACTCTCGATTTTCTAGGATTGGGGATGGCCGCTGGTGGAAGCCCCGGTGGAGGCTTATCTGCACTCATCACATCTATCGGCGGTGGTCTGGATGTTACGGCCGCCGCATCCTTTGGTAATGGAGAGTTCCCTGACAAAGATAATGGGAGGAGCTTGTGA 1467 0.4649 MSIDLDNVSTTSGGEASVSSSGVNPTESSKPITKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHQRGHNLPWKLRQRSSNEVKKKVYVCPEQTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTRENKCDCGTLFSRRDSFITHRAFCDALARESAGSQTVAVNSNSRSDSKVIMGDSLPQSPATTTQSNAVQTQNQDLPENPPQIGEVQATTVLNGSCNGCATTSNSVFTSLFAPSTISTSLQSQTPAFTGLVRAIGCPDRPADHPDPSSSDPISLRISNNHGSSIFGAGVQEQHQYAPPPQPAMSATALLQKAAQMGAAATNASLLQGFGVVSSSTTSHSSSQQHNLQWSHGQQLEPSESGSLLAGLGLELPCDNGSGLKELMMGTPSFFSPKQTTLDFLGLGMAAGGSPGGGLSALITSIGGGLDVTAAASFGNGEFPDKDNGRSL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1271 488 MobiDBLite consensus disorder prediction 198 237 - -
Lan17g1271 488 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Lan17g1271 488 MobiDBLite consensus disorder prediction 1 46 - -
Lan17g1271 488 Gene3D Classic Zinc Finger 60 160 - -
Lan17g1271 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lan17g1271 488 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lan17g1271 488 MobiDBLite consensus disorder prediction 375 401 - -
Lan17g1271 488 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Lan17g1271 488 SMART c2h2final6 139 159 IPR013087 -
Lan17g1271 488 SMART c2h2final6 63 85 IPR013087 -
Lan17g1271 488 SMART c2h2final6 104 134 IPR013087 -
Lan17g1271 488 MobiDBLite consensus disorder prediction 1 29 - -
Lan17g1271 488 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 486 - -
Lan17g1271 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1271 Lan-Chr17 20985443 20988270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1271 1 486 IDZ Gene Family AT3G50700 55.578 1.39e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan17g1271 zf-C2H2_jaz 9.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1271 K25869 - gmx:100806404 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1271 17 20985443 20988270 Lan6g0160 6 1156002 1159439 LSH
Lan17g1271 17 20985443 20988270 Lan17g1271 17 20985443 20988270 PCT
Lan6g0160 6 1156002 1159439 Lan17g1271 17 20985443 20988270 PCT
Lan17g1271 17 20985443 20988270 Lan6g0160 6 1156002 1159439 PCT