Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1270 ATGTCTTCTCCTCATAACTCTTCTCCTGATAATGCTACACCCGACAACTCTACACCTGACGACTCTATTCCCGATGACTCTACACCCGACAACTCCAAACCCAATAATTCTAAACCTCATAACTCGACACCTGATAATTCGACACCTGATAATGCTACACCTGATAACTCTGATGGAAAACCTAATAGTTCATCTTCACAACCTGGATCAAATGAGTCTCCAACAACACAGAAATCATTACCAAATGGAAAAGCAGCTTCAAGTGGTGGCAAGGATGATAACAAAGCAATGGTTGGAGCTGCTGTTGGAGTTGTGTTCGTTCTTCTTATTCTAGTCATTGTTTGTGTCATTTGGTCAAGGAAGAAGAAAAGAAAGCAAAAATACTATTATGAACAACCTCCTTCAGGTAATAACTACTACAACAGTGGAGCCTCACATCCAAATTGGTCAGGTCCAAATGGGTTACCCTCAGAACATGCTATAAGGATGCACCAATCAGGAGGGTGGGGTCCTGAAATGAACAACACTCCTTCATCAGGACTTGTCCTACCCCTTAAGGGTGGTACCTTCACATATGAGGAACTAGCTGATGCTACAAATAACTTTGCAAATGAGAATATTGTAGGACAAGGTGGGTTTGGTTATGTACATAAAGGAGTGTTACATAATGGAAAAGAAGTTGCAGTGAAGAGTTTGAAATCAGGTAGTGGACAAGGAGAGAGAGAATTTCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGACATCTTGTGTCACTTGTTGGATATTGTATTTGGGGAGGACAGAGAATGTTGGTCTATGAATATGTTCAGAATCAAACTTTAGAACACCACCTTCATGGAAAGGGTGTTCCTACCATGGATTGGCCTACTAGAATGAGGATTGCAGTAGGATCTGCTAAAGGGCTAGCATATCTTCATGAAGATTGTCATCCTCGCATAATCCACCGTGATATTAAAGCTTCTAATGTCCTCCTTGATGCTAGCTTTGAAGCCAAGGTTGCTGATTTTGGATTGGCTAAGTTGACAACTGATAATAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCAGATGTATTCTCATTTGGGATAATGCTTTTAGAACTCATAACAGGGAAAAGGCCTTTGGATCTCACAAATACCATGGAGGATAGCTTAGTGGATTGGGCTCGACCACTATTGAGTCGTGCACTAGAAGGGGATGGAAACTTTGGAGAATTGGTGGATCCATTCTTGGAAGGAAATTACAATAGCCAAGAAATGGCAAGGATGGTAGCTTGTGCTGCTGCAAGCATTCGTCATTCGGCTAAGAAACGAGCAAAAATGAGCCAGATAGTAAGAGTACTGGAAGGGGATGTCTCATTAGAAGACTTGAAAGAGGGAGTGAGGCCTACAAGTTCAGGGCAGAGCAGCACTTATACCCTTTCATCTGGGAGCCCAGAATATGATACAATGCAATATAATGCTGATATGATAAAGTTTAGACAACAAATATTGTTTAGTGATGACAGCATCGAAATCTCTAGCAAAGAATATGGGCATCATTAG 1626 0.4139 MSSPHNSSPDNATPDNSTPDDSIPDDSTPDNSKPNNSKPHNSTPDNSTPDNATPDNSDGKPNSSSSQPGSNESPTTQKSLPNGKAASSGGKDDNKAMVGAAVGVVFVLLILVIVCVIWSRKKKRKQKYYYEQPPSGNNYYNSGASHPNWSGPNGLPSEHAIRMHQSGGWGPEMNNTPSSGLVLPLKGGTFTYEELADATNNFANENIVGQGGFGYVHKGVLHNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIWGGQRMLVYEYVQNQTLEHHLHGKGVPTMDWPTRMRIAVGSAKGLAYLHEDCHPRIIHRDIKASNVLLDASFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGKRPLDLTNTMEDSLVDWARPLLSRALEGDGNFGELVDPFLEGNYNSQEMARMVACAAASIRHSAKKRAKMSQIVRVLEGDVSLEDLKEGVRPTSSGQSSTYTLSSGSPEYDTMQYNADMIKFRQQILFSDDSIEISSKEYGHH* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1270 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672|GO:0006468
Lan17g1270 541 PANTHER RECEPTOR-LIKE KINASE 184 539 - -
Lan17g1270 541 PANTHER RECEPTOR-LIKE KINASE 11 174 - -
Lan17g1270 541 ProSitePatterns Protein kinases ATP-binding region signature. 208 230 IPR017441 GO:0005524
Lan17g1270 541 MobiDBLite consensus disorder prediction 1 93 - -
Lan17g1270 541 SMART serkin_6 202 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1270 541 SUPERFAMILY Protein kinase-like (PK-like) 183 475 IPR011009 -
Lan17g1270 541 MobiDBLite consensus disorder prediction 1 84 - -
Lan17g1270 541 ProSiteProfiles Protein kinase domain profile. 202 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1270 541 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 11 174 - -
Lan17g1270 541 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 184 539 - -
Lan17g1270 541 Pfam Protein tyrosine and serine/threonine kinase 205 404 IPR001245 GO:0004672|GO:0006468
Lan17g1270 541 Gene3D Phosphorylase Kinase; domain 1 175 277 - -
Lan17g1270 541 Gene3D Transferase(Phosphotransferase) domain 1 278 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1270 Lan-Chr17 20979146 20982554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1270 74 530 Trihelix Transcription Factor Family AT1G70460 52.128 4.53e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lan17g1270 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1270 - - gmx:100800744 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1270 17 20979146 20982554 Lan17g1270 17 20979146 20982554 PCT