Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1269 ATGGGAGATTTCAACAATGATCCTCTTATGCGTAACCAAAACGCCGCCGTTCAGGCTCGTGCTAAAGCTCAGAATCGTGCCAACGTCCTTCAACTCAAACTGATTGGACAGAATCACCCAACTGGTCTCACATCGAACCTGTTGAGGCTCTTTGAACCCAGGCCTCCCTTGGAGTATAAACCTCCTCCCGAAAAAAGAAAATGTCCACCATTAACAGGGATGGCACAATTTGTGAGCAAGTTCGCAGAGCCCGGTGATCCTGAATATTCTCCACCTGTACCAGTAGCTGAAACTCCTGCAGAAAAAAAAGCAAGAATACACAAGCTGAAAATAGAGAAGGGAGCTGCAAAGGCTGCAGAGGAGCTTGAAAAATATGATCCACACAAGGACTCAAATATATCAGGAGATCCATACAAGACACTGTTTGTAGCCAGACTGAGTTATGAGTCCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTACGGTTGGTTACTGACAGCATGACAAATAAACCCAAGGGTTACGCATTCATTGAATATCTGCACACAAGAGACATGAAAGCTGCTTATAAGCAAGCTGATGGTAGGAAAATTGAGGGCAGAAGAGTGCTTGTTGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCTCGCCGTCTAGGTGGTGGCCTTGGTACTACTAGAGTGGGAGGTGAAGAAGTTAATCAGCGGCATTCTGGGAGGGAGCAACAGCAGTCCGGACCATCACATTCTGAAGAACCCAGAGTGCGGGAGGATCGACATGCTGATCGGGACAGAGAAAAATCACGGGAAAGAGTTAAAGATAGAGATAAAGAACTGGAGCGGTCACTTGAACGCCCTAGTGATAGGGCCAAGGATCGTGATTATAGAGAGGATAAGCACCACAGAGACCGGGATAGGAACAGGGACAGAGATAGGGAAAAGGAGAGAGATCGTGGTCGTGATAGAGAAAGAACACGTGATCGGGATCGTGGTCGAGATCGCAATGATCGGGATAGAGAGAGGGATCGGGATCGTGAACATGATCGCCATCGTGAAAGGGATAGGGATTATGAAGTTGAGGAAACTGACCGGGGACGCTCGCATGATAGAAAGACTGATTATGATCATATTGAAGCTAATGATGAGAAAGATCGTCATGATGATGGAGTCCATGACTATGAACCTGAGGATGATGGCCGGTACCAACCTGTGCATCGACATAGGCATGCGGATTCTGACCATGATGCTGATCAGTATGAGCATCGGGGCCGGGGGAAACATGATGATGGAGATGACCACGGTGACCGCTACAATGAATATCCCGATCATGATAGGATGGAAGACGACTACCACACTGAAAGGGAGAGAAGTCATGATGTGGACCGTGGATATCGTCGCTCGGAGAGGTCTCATTCCCGTGATCATGAATACTAG 1461 0.4764 MGDFNNDPLMRNQNAAVQARAKAQNRANVLQLKLIGQNHPTGLTSNLLRLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPVPVAETPAEKKARIHKLKIEKGAAKAAEELEKYDPHKDSNISGDPYKTLFVARLSYESTESRIKREFESYGAIKRVRLVTDSMTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSHSEEPRVREDRHADRDREKSRERVKDRDKELERSLERPSDRAKDRDYREDKHHRDRDRNRDRDREKERDRGRDRERTRDRDRGRDRNDRDRERDRDREHDRHRERDRDYEVEETDRGRSHDRKTDYDHIEANDEKDRHDDGVHDYEPEDDGRYQPVHRHRHADSDHDADQYEHRGRGKHDDGDDHGDRYNEYPDHDRMEDDYHTERERSHDVDRGYRRSERSHSRDHEY* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1269 486 SUPERFAMILY RNA-binding domain, RBD 130 239 IPR035979 GO:0003676
Lan17g1269 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Lan17g1269 486 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Lan17g1269 486 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 360 - -
Lan17g1269 486 Gene3D - 126 251 IPR012677 -
Lan17g1269 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Lan17g1269 486 PANTHER - 1 360 - -
Lan17g1269 486 SMART rrm1_1 140 213 IPR000504 GO:0003723
Lan17g1269 486 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Lan17g1269 486 MobiDBLite consensus disorder prediction 221 486 - -
Lan17g1269 486 MobiDBLite consensus disorder prediction 259 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1269 Lan-Chr17 20970517 20976403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1269 K11093 - gmx:100800903 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1269 17 20970517 20976403 Lan6g1371 6 15942523 15948339 LSH