Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1256 ATGCAAACTCACTCTTTTTCCTACATATCTTCCTCTAATGGAAGTAGTAGTAATAATGCATTCTTTGAAGCTGATGAAGTTGATGATGAAGCCTCCATTTTCCTTTCTCTTGGCCCTCCTGGCCAACACAACCCCAAACCTATGTCTTCCTTAAACCACTCTACCACTACTCTTTGCCAAGCCCAAAACCCTACTATTTGTGATGATCATAGTGGTATAACAGTTGCATTACACATTGGTCTTCCTTCCACAACACAAAACATAAACCCTGCTAACACAAAACCTGATTATTTGACTTCAACACCATTGCAGGGTCAGTATTGGATTCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCTCAGTCTGTAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATACAGAAAAGGAGCTGAATCATTGAGAGGGGTGAAACCAGCTTCTTCAATGCTAAGGTTACCATGCTATTGTTGTGCTGAGGGTTGCAAGAACAACATAGATCACCCAAGGTCAAGGCCATTGAAGGATTTCAGGACCCTTCAAACACACTACAAGAGGAAGCATGGTGCAAAGCCATTTGGGTGTAGAAAGTGTGGGAAACCATTTGCTGTAAGAGGGGATTGGAGAACACATGAGAAGAATTGTGGAAAGCTTTGGTTTTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGACCATGTTCGTGCCTTTGGTGATGGACATGCTCCTCATACGGTAGAAGGTTGTGGTGATCAAAATTTGATGGGAGATGAAGATTTGCTATTAGGTGATGAAGATGAAGATGATGATGAGGAGTTTGATGAAGATGACACTAACAATGAAAATGGTTTTCACTTTTAA 912 0.4156 MQTHSFSYISSSNGSSSNNAFFEADEVDDEASIFLSLGPPGQHNPKPMSSLNHSTTTLCQAQNPTICDDHSGITVALHIGLPSTTQNINPANTKPDYLTSTPLQGQYWIPSPAQILIGPTQFSCSVCNKMFNRFNNMQMHMWGHGSQYRKGAESLRGVKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVEGCGDQNLMGDEDLLLGDEDEDDDEEFDEDDTNNENGFHF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1256 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Lan17g1256 303 SUPERFAMILY beta-beta-alpha zinc fingers 190 227 IPR036236 -
Lan17g1256 303 MobiDBLite consensus disorder prediction 277 303 - -
Lan17g1256 303 PANTHER ZINC FINGER PROTEIN WIP2 3 296 IPR043584 GO:0003700|GO:0010468
Lan17g1256 303 PANTHER ZINC FINGER PROTEIN WIP6 3 296 - -
Lan17g1256 303 MobiDBLite consensus disorder prediction 277 295 - -
Lan17g1256 303 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Lan17g1256 303 Gene3D Classic Zinc Finger 166 254 - -
Lan17g1256 303 SUPERFAMILY beta-beta-alpha zinc fingers 115 144 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1256 Lan-Chr17 20857389 20858922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1256 29 263 C2H2 Transcription Factor Family AT1G13290 71.951 2.11e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan17g1256 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1256 - - aprc:113870355 438.343