Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1254 ATGTCTTCTGCCGGCGGCGACGGCGGTGTCAGCGGCGACGGCGGTGTCAGCGGCGGCAACGCTTCTTCTCCTCACCAATATTTCTGCCACCAGTGCAACCGCACCGTCTCCATCATTCCCTCCTCCGATCTCACCTGTCCCGATTGCAACAGCGGATTCATCGAAGAAATCGAAAACCCAATCCCTCAACATCACCACCATCAACATCAACATCAACATCAACCGTTCTCGTTCACCTATGAACTCGGCGGCGACGATCTCCCTTCAATCTTCGCCGGCCGATCTCCTTTCGGCGACGGCGACGCCTTCAATCCTCTCGCTTTTCTCCAAAATTATATCCAAACCCTAAGAGCTGGTGGCTCCAACGTTCAATTCGTCGTCGATAACAACGCATCGACGAATCTCAACCTCGGTGATTACTTCTTCGGCCCTGGTCTCGAGCAATTGATTCAGCAACTCGCGGAGAATGATCCCAACCGCTACGGTACCCCTCCGGCTTCAAAATCTGCCATCGAGGGGCTCCCGAATGTCGCGGTTACCGAGGAATTGCTTGCTTCTGATTTATCACAATGTGCAGTGTGTAAAGACACGTTTGAGTTAGAGGAAATTGCTAAGCAGTTACCTTGTAAGCACATTTATCATTCTGATTGTATTATGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGTCGTTACGAGTTACCGACCGATGATCCTGAATATGAGCAGAGGGGTCAGGGCAGTGGAGGTGGAGGAGGGGGTGGGGTCCAGCTGGAGCAGAACGCTGGAGATAGCTCGCAGTTGCAGTTGCAGTCGCCGAGGGAGCTCAGGTTTAGGGTTTTGCCATGGCCTTTTAGGCAATTTGCTGGAGATACAAGCAATGTTGGTACCGGGAATGATGATAATAACAACACTGGTGGAGGATCAAATCCTGGAAGTAGGGGAAATCAGAATTTCCAGTCAGAAACCAGAGAAGAAGATCTGGATTGA 993 0.5096 MSSAGGDGGVSGDGGVSGGNASSPHQYFCHQCNRTVSIIPSSDLTCPDCNSGFIEEIENPIPQHHHHQHQHQHQPFSFTYELGGDDLPSIFAGRSPFGDGDAFNPLAFLQNYIQTLRAGGSNVQFVVDNNASTNLNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPNVAVTEELLASDLSQCAVCKDTFELEEIAKQLPCKHIYHSDCIMPWLELHNSCPVCRYELPTDDPEYEQRGQGSGGGGGGGVQLEQNAGDSSQLQLQSPRELRFRVLPWPFRQFAGDTSNVGTGNDDNNNTGGGSNPGSRGNQNFQSETREEDLD* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1254 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 17 75 - -
Lan17g1254 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 99 272 - -
Lan17g1254 330 SUPERFAMILY RING/U-box 170 238 - -
Lan17g1254 330 CDD RING-H2_RNF126_like 190 232 - -
Lan17g1254 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 17 75 - -
Lan17g1254 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 272 - -
Lan17g1254 330 MobiDBLite consensus disorder prediction 291 320 - -
Lan17g1254 330 SMART ring_2 191 231 IPR001841 -
Lan17g1254 330 MobiDBLite consensus disorder prediction 240 274 - -
Lan17g1254 330 Pfam zinc-ribbon 26 57 IPR039525 GO:0061630
Lan17g1254 330 MobiDBLite consensus disorder prediction 260 274 - -
Lan17g1254 330 Pfam Ring finger domain 190 232 IPR001841 -
Lan17g1254 330 MobiDBLite consensus disorder prediction 289 330 - -
Lan17g1254 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 238 IPR013083 -
Lan17g1254 330 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1254 Lan-Chr17 20834896 20839731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1254 136 244 C3H Transcription Factor Family AT5G01980 52.294 8.24e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1254 - K11982 lang:109333167 444.121