Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1238 ATGCCGAAGGCTAAACTTCAATCTAAATCCATTGATAACAAGTTGAAGCGGAAAGGTGGTGGAAGTGGGAATAAACAATCAAAGAAAGCTGCTAAAGATCCTAACAAGCCAAAGAGGCCTCCTACTCCTTTCTTTGTTTTCATGTCTGAGTTTAGAGAGCAGTACAAGAAAGATTTTCCGGAAAACAAATCTGTAGCCAATGTCAGTAAAGCTGGTGGTACAAAATGGAAGTCAATGTCTGATGCTGAGAAAGCTACTTACGTTGCCAGGGCAGAGAAGAAGAAAGAGGAGTATGGTAGAAATATTCTGGCCTACAATAAGAAATTGGAGGGCAAGAATCCTTCAGAGGAAGATGAATCTGACAAGTCAAGGTCTGAAGTGCATGATAATGATGAAGATGAGGGGGAAGATGATGATGAGTGA 423 0.409 MPKAKLQSKSIDNKLKRKGGGSGNKQSKKAAKDPNKPKRPPTPFFVFMSEFREQYKKDFPENKSVANVSKAGGTKWKSMSDAEKATYVARAEKKKEEYGRNILAYNKKLEGKNPSEEDESDKSRSEVHDNDEDEGEDDDE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1238 140 Gene3D High mobility group box domain 20 122 IPR036910 -
Lan17g1238 140 MobiDBLite consensus disorder prediction 59 82 - -
Lan17g1238 140 SMART hmgende2 36 107 IPR009071 -
Lan17g1238 140 MobiDBLite consensus disorder prediction 95 140 - -
Lan17g1238 140 Coils Coil 88 108 - -
Lan17g1238 140 MobiDBLite consensus disorder prediction 1 43 - -
Lan17g1238 140 MobiDBLite consensus disorder prediction 110 129 - -
Lan17g1238 140 CDD HMGB-UBF_HMG-box 37 98 - -
Lan17g1238 140 SUPERFAMILY HMG-box 24 105 IPR036910 -
Lan17g1238 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Lan17g1238 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lan17g1238 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 138 IPR031061 -
Lan17g1238 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1238 Lan-Chr17 20682907 20685141 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan17g1238 HMG_box 9.4e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1238 K25507 K22507 gmx:100305957 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1504 6 21958324 21960608 Lan17g1238 17 20682907 20685141 LSH