Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1236 ATGGTGTCGTGTTCTTCATCATCAGGATCAGAAGAAGACGGTGAGGGCTTCGACTCTTACCGGAAAGGAGGATACCACGCCGTCAGGATCGGCGATCAATTCGCCGCCGGTAGGTATATTGCTCAGAGGAAGCTTGGTTGGGGTCACTTCTCCACCGTATGGCTCGCTTATGATACCACCACTTCCGCATATGTTGCTCTAAAGATCCAGAAAAGCGCGTCTCAGTTTGTTGATGCAGCACTTCATGAAATTGAAATTCTTTCATCCATTGCTGATTGTGCTTCCTCTTCAAATGCATCTTCAAATGTAAAGTTTGTTATTCAATTGATTGATCACTTTAAGCATACAGGCCCTAATGGCCAGCACCTTTGTATGGTTCTCGAGTTTCTCGGCGATAGCTTGCTTCGGCTTATCAAATTTAGCCGTTACAAAGGCCTTCCATTGGATAGAGTTAGGGAGATTTGTAAATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACATGGTATTATCCATACAGACCTAAAACCTGAAAATGTTCTTCTGGTTTCGACCATCGATCCTGCCAAAGACCCTGTTAGATCTGAAACTGCCCCAATTCTAGAGAGGCCGGAGGGAAACATAAATGGCGGAGTTACAAGTCTTATCGAGAAAAGGTTGAAAAGGAGAGCGAGGAGGGCAGTTGCTAAGATATCTGGAAGAAAAGATTCAATGGTGGAAACAGGAGAAGCTCCAAAGCCTGATAGAAATATTGATGGGGTAGATGTGAGATGCAAGATAGTAGATTTCGGAAATGCGTGTTTCGCTGACAAGCCGATTGCACAAGAAATTCAGACAAGGCAGTACAGGGCTCCTGAAGTTATACTGGAGGCTGGGTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCTCTGATGATGGAACTACTTGGAAAGATTCCGCGAAAGATTGCTACTGCTGGAGCAAAATCCAAAGATTTTTTTGATAGACATGGTGATCTTAAAAGGATCAGAAGGCTAAAATTCTGGCCACTTAACAAGTTATTGATTGATAGATATAAATTTCCAGAGAATGATGCTCATGAGTTTTCGGAGTTTCTTTTGCCACTTCTCGATTTTGCACCGGAAAAGCGACCAACTGCACAGCAGTGCCTGCAACACCCATGGCTCAACTGCAAGGACTCCACTCCAACTTAA 1284 0.4361 MVSCSSSSGSEEDGEGFDSYRKGGYHAVRIGDQFAAGRYIAQRKLGWGHFSTVWLAYDTTTSAYVALKIQKSASQFVDAALHEIEILSSIADCASSSNASSNVKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKFSRYKGLPLDRVREICKCILIGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPVRSETAPILERPEGNINGGVTSLIEKRLKRRARRAVAKISGRKDSMVETGEAPKPDRNIDGVDVRCKIVDFGNACFADKPIAQEIQTRQYRAPEVILEAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKIPRKIATAGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIDRYKFPENDAHEFSEFLLPLLDFAPEKRPTAQQCLQHPWLNCKDSTPT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1236 427 ProSiteProfiles Protein kinase domain profile. 39 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1236 427 Gene3D Transferase(Phosphotransferase) domain 1 93 419 - -
Lan17g1236 427 CDD STKc_SRPK 28 419 - -
Lan17g1236 427 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 422 - -
Lan17g1236 427 PANTHER OS07G0472400 PROTEIN 8 422 - -
Lan17g1236 427 Gene3D Phosphorylase Kinase; domain 1 25 129 - -
Lan17g1236 427 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Lan17g1236 427 SUPERFAMILY Protein kinase-like (PK-like) 33 420 IPR011009 -
Lan17g1236 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lan17g1236 427 Pfam Protein kinase domain 40 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1236 427 Pfam Protein kinase domain 258 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1236 427 SMART serkin_6 39 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1236 Lan-Chr17 20674499 20677497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1236 5 420 EF-hand Containing Proteins AT5G22840 50.000 3.36e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lan17g1236 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1236 K08832 - gmx:100811724 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0453 17 3439380 3443719 Lan17g1236 17 20674499 20677497 PCT
Lan18g0866 18 14025171 14029688 Lan17g1236 17 20674499 20677497 PCT
Lan6g0415 6 3314597 3318510 Lan17g1236 17 20674499 20677497 PCT
Lan17g1236 17 20674499 20677497 Lan17g0453 17 3439380 3443719 PCT
Lan17g1236 17 20674499 20677497 Lan18g0866 18 14025171 14029688 PCT
Lan17g1236 17 20674499 20677497 Lan6g0415 6 3314597 3318510 PCT