Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1235 ATGATTAGTGTTTGGGTTTTGGTGTTGACGGTTCTCGCAAATGGGTTCTCTTCAACCGGAATTGGCATGGATAATTCCACCATACCCGATTTTGTAAATATCGGGGTTCTCTACTCTTTCAACACTAGTGTTGGTAGAATTGTGAAGATTGCTGTAGAAGCTGCAGTTGAAGATGTAAATTCTGATCCATCTATTCTTGGTAAAACTAAGCTCAAGGTCTCACTACAAGAAGATTCCAAATACAGAGGTTTTTTGAGCATTGCCGAGGCCTTGCAGCTCATGGCGACGCACACTGTGGCCATTATCGGCCCACAGACCTCTACAACTGCCCATGTCATATCACATATTGCGAACGAGCTCCAAGTACCCCTTCTATCATTTTCAGCTACTGACCCTACCCTATCTTCACTTCAATTCCCGTTCTTTATTAGAACTGCTTTTAGTGATATTTATCAAATGACGGCAATAGCAGACCTTGTTAACTACTACGAGTGGAGAGAAGTTATTGCAGTCTATGGCGATGATGACCATGGAAGGAATGGAATCGGCGCTTTAGGTGATAAGCTTGCTGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGAGTCCTGAGGCAACTAGGGAGGAGATTACTGACGTGCTTGTTCAGGTGGCTCTTGCAGAATCACGAGTTATAGTTATTCACACAAGTACTGCTTGGGGACCGAAAGTGTTAGCTGTGGCAAAGTCTCTTGGAATGATGGAAAATGGGTATGTCTGGATAGCCACCAATTTTCTGTCTACTCGGCTGGACATCGATAGTCCCCTCTCATCCGATGTAATGGATGAAATTCAAGGAGTTATTACACTACGTATGTACATACCAGATTCGAAGCACAAAAGAGAGTTTGCTTCTTCTAGGTGGAAAGGCTTAACCAGTGGAAAGACTGCTAATGGTTCCCTCGGATTGAGTACTTACGGTATCTTTGCATATGATACTGTTTATTTGCTTGCCCGTGCGCTTGATACTTTTTTCAAACAAGGGAACCAAATAACATTTTCTTCTGATTCGAAGCTATCTCAACTACGTGGAGACAACATGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAAATTGTTGCTTAAAAGTATTTATGCGGTTAACATGACTGGTGTATCAGGTCCATTCATGTATACATCTGATGGAAACCTTGTTAATCCAGCATATGAAATCATCAATGTGATCGGAACAGGAACTCGGAGGATTGGTTACTGGTCTAATTACTCTGGATTATCGCTTGTTCCTCCGGAAACACTGTATTCAAAGCCACCTAATCGTTCCAGTGCAGGTCAAAAGCTACTCACTGTGATTTGGCCTGGGGAAACAGCCAAAAAGCCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGGTGTTAAAAATTGGAGTACCGAAAAGGGTTAGCTACCCTGACTTTGTCTCGCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTAAATTTGTTGCCCTATGCTGTCCCCTACAAATTTATCCCGTACGGGGATGGTCACAGCAATCCTAGTAACACCGAGCTTGTTCGTCTAATCACAGCGGGTGTCTTTGATGCTGCGGTAGGTGATATTACAATTACTACCGAAAGATCAAAGATGGTAGATTTTACTCAGCCGTTTATCGAGTCCGGCCTAGTGGTAGTAGCAGCGGTTAAGAAGACAGAATCCAATGCTTGGGCATTTTTTACACCATTTACCCCAATGATGTGGACTGTCACTGCTATCTTTTGCATAATAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGACTGAATAAGGATTTTCGGGGACCCCCCAGAAAACAAATAATCACAACATTGTGGTTTAGCTTATCAACTATGTTCTTTGCCCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTACTTATATGGTTATTCGTAGTTCTTATAATTAACTCAAGTTACACGGCAAGCTTGACTTCAATCCTCACGGTGCAACAACTTTCTTCGCCCATTAAAGGCATCGGAAGTTTAATAAATAGCAAAGAACCTATCGGCTACTTGCAGGGTTCTTTTACTCGGAATTATTTAATTGGCGAAATTGGTATTGATGAATCAAGACTTGTCCCCTTAAAAACACCAGAAGAGTCTACTAAAGCATTGGAAAAAGGTCCTCGTAAGGGTGGCATTGCTGCGTATGTTGATGAACGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGCGGTTTTACTGTTGTAGGTCAAGAGTTCACTAGAAATGGTTGGGGATTTGCTTTTCCGCGAGACTCGCCGTTAGCAGTCGATATGTCAACCGCGATTTTGGAGTTAGCGGAGAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGCATTGCATGCCTATCACAAGGTGCAAAGCTTGAAGTAGACAGACTCAATCTTAGAAGCTTTTGGGGTCTATATCTAGTTTGTGGATTAGCATGTTTACTTGCTCTCTTGGTATACCTTATTCAAACCTTGAGGCAGTACAACAAGCACTGCCCAACAGAACCCGAATGCTCCGGATCGTCACATTTCCGAACTTTCCTTTCGTTTGTGGACGAAAAAGAAGACATAGCTAAGAGCAGGTCGAAAAGAAGGCAAATGGAGATGATATCATATAGAAGCACAAGTGAAGTTGGATCTTCCATCAGTAATGCAGAATATTATCAATCATCTATGAACAGAATTGATTGTACTAATGAAGTTTAA 2805 0.4217 MISVWVLVLTVLANGFSSTGIGMDNSTIPDFVNIGVLYSFNTSVGRIVKIAVEAAVEDVNSDPSILGKTKLKVSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFSDIYQMTAIADLVNYYEWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMSPEATREEITDVLVQVALAESRVIVIHTSTAWGPKVLAVAKSLGMMENGYVWIATNFLSTRLDIDSPLSSDVMDEIQGVITLRMYIPDSKHKREFASSRWKGLTSGKTANGSLGLSTYGIFAYDTVYLLARALDTFFKQGNQITFSSDSKLSQLRGDNMHLDAVKIFNEGKLLLKSIYAVNMTGVSGPFMYTSDGNLVNPAYEIINVIGTGTRRIGYWSNYSGLSLVPPETLYSKPPNRSSAGQKLLTVIWPGETAKKPRGWVFPNNGRVLKIGVPKRVSYPDFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFIPYGDGHSNPSNTELVRLITAGVFDAAVGDITITTERSKMVDFTQPFIESGLVVVAAVKKTESNAWAFFTPFTPMMWTVTAIFCIIVGAVVWILEHRLNKDFRGPPRKQIITTLWFSLSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIGSLINSKEPIGYLQGSFTRNYLIGEIGIDESRLVPLKTPEESTKALEKGPRKGGIAAYVDERAYIELFLSSRCGFTVVGQEFTRNGWGFAFPRDSPLAVDMSTAILELAENGDLQRIHDKWLLSIACLSQGAKLEVDRLNLRSFWGLYLVCGLACLLALLVYLIQTLRQYNKHCPTEPECSGSSHFRTFLSFVDEKEDIAKSRSKRRQMEMISYRSTSEVGSSISNAEYYQSSMNRIDCTNEV* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1235 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Lan17g1235 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Lan17g1235 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Lan17g1235 934 Gene3D - 468 583 - -
Lan17g1235 934 PIRSF IGluLR_plant 1 933 IPR017103 -
Lan17g1235 934 Gene3D - 735 778 - -
Lan17g1235 934 Gene3D - 148 426 - -
Lan17g1235 934 CDD GluR_Plant 471 813 - -
Lan17g1235 934 PANTHER GLUTAMATE RECEPTOR 10 924 - -
Lan17g1235 934 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Lan17g1235 934 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Lan17g1235 934 Pfam Receptor family ligand binding region 49 411 IPR001828 -
Lan17g1235 934 Gene3D - 779 812 - -
Lan17g1235 934 CDD PBP1_GABAb_receptor_plant 33 430 IPR044440 -
Lan17g1235 934 Gene3D - 584 705 - -
Lan17g1235 934 Gene3D - 50 401 - -
Lan17g1235 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 924 - -
Lan17g1235 934 SUPERFAMILY Periplasmic binding protein-like I 28 465 IPR028082 -
Lan17g1235 934 Pfam Bacterial extracellular solute-binding proteins, family 3 517 813 IPR001638 -
Lan17g1235 934 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1235 Lan-Chr17 20663431 20668696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1235 5 910 Ion Channels AT3G51480 59.584 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1235 K05387 - gmx:100788917 1567.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0078 18 581174 586628 Lan17g1235 17 20663431 20668696 LSH
Lan18g0078 18 581174 586628 Lan17g1235 17 20663431 20668696 PCT
Lan6g0410 6 3290733 3295195 Lan17g1235 17 20663431 20668696 PCT
Lan17g1235 17 20663431 20668696 Lan18g0078 18 581174 586628 PCT
Lan17g1235 17 20663431 20668696 Lan6g0410 6 3290733 3295195 PCT