Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1227 ATGGATTCTAATGAGAATGAGCGTGTGACGGTTCGAGAGTTCTGTGCGAATGGAACCTTCTTGGTGACAACAGAAATTGAGGCCAAGCTTGATGAAGGAAACATTCAAGAAGCAGAAGCTGCATTGCGAGAAGGGTTGTCACTCAATCATGAGGAAGCAAGATCTCTTCTCGGAAAGTTAGAGTATCAAAGAGGTAATGTTGAAGGCGCACTTCGTGTTTTTGATGGGATTGATCTGCAAGCGGCTATACAGCGATTACAGCCTTCCCTTTCTGAAAAGTCACCAGTCAAGAAAGGTTCCATTCGCACTGGATCACCTTCTTCGGTCTCTCAGCATGCTGCTAGTTTGGTGCTCGAAGCCATCTACTTAAAATCCAAATCTCTACAAAAACTGGGAAAATTTACTGAAGCTGCTAATGAATGCAAGCGTGTTCTTGATGCTGTTGAGAACATATTTTATCAGGGTGTACCTGATATTCAAGTCGACAATAAATTGCAAGAGATAGTAAGCCATGCAGTAGAGCTGCTTCCAGAGCTTTGGAAATATGCCGGTTGCTATAATGAGGCAATATCTGCTTATAGGCATGCACTTCTTAGTCAGTGGAACCTCGATAACGACTTCTGTGCAAGAATTCAAAAAGCCTTTGCTGTGTTTTTGCTGTACAGTGGGGTGGATGCAAGTCCACCTAGTTTAGCTGTTCAGGTTGAGGGATCTTACGTACCAAAAAATAATTTGGAAGAGGCGATTCTGCTTCTAATGATTCTTTTACAAAAGTTTAGCCTTGGTAAGATAAAATGGGATCCTTCAATTATGGAACACCTGACATTTGCTCTTTCAGCATGTGGCCAAACTTCTTTAGTAGCAAAGCAACTTGAGGAGTTGCTTCCGGGTGTATATCATCGTATTGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGTGCTGGACAAAACATAAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACATGAACGACCCGATGACCTTATATCATTGTTATTGGCTGCCAGGCTTTGCAGTGAGGATCCTCCTCTTGCTGCCGAGGGGGCAGGCTATGCACAGCGGGCGATTAACAATGCTCATGGCCAGCATGAGCATTTAAAAGGTGTGGCTCTTCGGATGTTGGGACTCTGCTTGGGAAAGCAAGCTATGGTTGCTTCCTCTGACTTCGAGAGGTCTCATCTTCAGTCCAAAGCTCTGCAATCGTTGGAGGAGGCAGCTAGAATGGAGCAAAACAACTCTGATCTAATTTTTGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCGTTACGCTATGCCAAACAGTTCTTTGACGAAACCGGTGGCTCTGTATTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTTCACAAAAAAGATATGCAGAGGCTGAAGTAGTGACTGATGCTGCTTTAGATGAGACTGTAAAATGGGAACAGGGGCCACTACTCAGGCTGAAAGCGAAGCTGAAGATCTCCCAATCACGACCCATGGATGCTATCGAAACTTACCGTTACCTTCTTGCATTGGTTCAAGCCCAGAGAAAATCCTTTGGGCATCTCAGAATTTGTTCACAGATTGAGGATGATAAAGTAAATGAATTTGATGTTTGGCATGATCTGGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGGGAGTTGAAGGAGTATTCGGCAGCAGTAATACACACCGAAGGAATTATTTTTGACGGACGTGGACAAAATCAAGAAGCTTTTGCTGCTACTACCAACGCTGTCCTACTCGAACCGAACTATGTTCCGAGCAAGATCTCAATGGGTTCTTTGATGCTTAAAATGGGTTCAAAAGCTTTGCCTGCTGCTAGAAGCTTAGTTTCTGATGCACTTAGAATAGAACCAACTAACCGCATGGCTTGGTATTACTTGGGATTAATTCACAGGCATGATGGCCGAATCGGCGACGCTGCAGATTGCTTCCAAGCAGCTTCAATGCTTGAAGAATCGGATCCCATCGAAAATTTCAGCACTATACTTTGA 2085 0.435 MDSNENERVTVREFCANGTFLVTTEIEAKLDEGNIQEAEAALREGLSLNHEEARSLLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKSPVKKGSIRTGSPSSVSQHAASLVLEAIYLKSKSLQKLGKFTEAANECKRVLDAVENIFYQGVPDIQVDNKLQEIVSHAVELLPELWKYAGCYNEAISAYRHALLSQWNLDNDFCARIQKAFAVFLLYSGVDASPPSLAVQVEGSYVPKNNLEEAILLLMILLQKFSLGKIKWDPSIMEHLTFALSACGQTSLVAKQLEELLPGVYHRIDRWNSLALCHSGAGQNISALNLLRKSLHKHERPDDLISLLLAARLCSEDPPLAAEGAGYAQRAINNAHGQHEHLKGVALRMLGLCLGKQAMVASSDFERSHLQSKALQSLEEAARMEQNNSDLIFELAVQYAKHRNLTAALRYAKQFFDETGGSVLKGWRLLALVLSSQKRYAEAEVVTDAALDETVKWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQRKSFGHLRICSQIEDDKVNEFDVWHDLANLYASLSHWKDAEICLQKARELKEYSAAVIHTEGIIFDGRGQNQEAFAATTNAVLLEPNYVPSKISMGSLMLKMGSKALPAARSLVSDALRIEPTNRMAWYYLGLIHRHDGRIGDAADCFQAASMLEESDPIENFSTIL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1227 694 SUPERFAMILY TPR-like 500 681 IPR011990 GO:0005515
Lan17g1227 694 Gene3D Tetratricopeptide repeat domain 534 692 IPR011990 GO:0005515
Lan17g1227 694 Gene3D Tetratricopeptide repeat domain 24 154 IPR011990 GO:0005515
Lan17g1227 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Lan17g1227 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Lan17g1227 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Lan17g1227 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Lan17g1227 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Lan17g1227 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Lan17g1227 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Lan17g1227 694 Gene3D Tetratricopeptide repeat domain 163 533 IPR011990 GO:0005515
Lan17g1227 694 SUPERFAMILY TPR-like 30 478 IPR011990 GO:0005515
Lan17g1227 694 Pfam Tetratricopeptide repeat 429 478 - -
Lan17g1227 694 Pfam Tetratricopeptide repeat 636 678 - -
Lan17g1227 694 Pfam Tetratricopeptide repeat 28 75 - -
Lan17g1227 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Lan17g1227 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1227 Lan-Chr17 20588601 20593258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1227 3 694 Calmodulin-binding Proteins AT2G43040 71.942 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1227 K21843 - gmx:100811897 1127.08