Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1212 ATGAGTTCCTTCTCCATCACAAGGAAGAAGACACCATTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCAGAAGACGAGACTGCTCGCTTATATGCTGAGTTTGTGGAGTCATTTCAAGGGGATAATGCTCCTGGGTCAAAGACTTTTGTTCGCGGAGGAACAATTAATCCCAATGACAAATTGAAAGATGACTTAGACGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCTTCTTTTCTACCCCCTCCATTGGCAACCAAGGGGAAGGAACCTGAAAGGAAAAAAGAGGAGGAGAAGCCAAAGGAGAAAGAGAAAGGAAAGTCAAGGAACATTGACCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGACCACTATCGTGATGGGCGCATTGTAGAACATTCTATTTCGAGCCGCTTTGATGAACTGCCAGATGACTTTGATCCCAGTGGGAAACTTCCGGGATCATTTGACGATGTTGATCCACAAACAACAAATCTTTATGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTAGCTTTCATGAACAGACCTGATGGGCAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTACGAGTATGAATTGAAAATTGGCTGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTGCCTGCACCCCCACCTGGGCATATGGCCATCAGGAGTAAGGAGGGTAATACTGTGATCTTATCTGGTCCATCCGGTCCAGCAGTAACTTCTGTGCCTAATCAGAACTCTGAATTGGTTCTTACTCCTAATGTTCCTGACATAATGGTTACACCTCCTGAGGATGACCATCTAAGGCATGTAATTGATACTATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAAAGGGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCGAAGGAACACACCTACTATGTTTGGAGACTTTACTCATTTGCTCAGGGTGATGCTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAGCGGGTAGTGGAAGGTGGATTCCACCCTCATTGCCAACAGCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTCCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTAACTGATCCACAGAGGGATGAATTTGAGGATATGCTCCGTGCTTTAACATTGGAAAGGAGCCAGATAAAAGTGGCTATGGGGTTTTCTTTGGACAATGCTGATGCAGCTGGTGAGATAGTTGATGTTTTAACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTTTCTGATATTCTTCATAATAGTAGTGCTCCTGTCAGAAATGCATCAGCATACCGCACCAAGTTTGAAGCAACTTTACCTGATATAATGGAGAGTTTTAATGACCTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCCACTTTCCTTCGCTCTGGGAACTCTGGTGTGATACTTTTCCATTCCATATGTGGTGATGCTCCTGAGGTTGAGCAGGTCACTTCCGAGGATATGGTTATCGGTGGCAAAACCAACCCAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGAAGGAGCTAATGAGTCTTCCCCTTGCTGAGCTTGAAAGGCGTTGCCGACACAATGGGTTGTCGCTTGTTGGTGGTAGAGAAATGATGGTTGCTCGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGCTATGAACTAGATGATGAATTAAAGTATGCCCAAAACCAAGCAAATTCCGGGAAATATCCGAGCAGTCGGCGAGAAACAAGCACTGAGCCAGAAACAGTGGGATTATCTGCTTGGAATCGCTATGGTGATGATTCACAGTCACAAGGCAAAGGGCCTGTACCTTTAGTGCCAACCCTTTCTATTCCACAGCCTGAAATAAAAGCCTTCACGAAAAAGGAGAAGAGTGAACCGGTTTTGCCAGCCTCTAAATGGGCTCGGGAGGATGACGAAAGTGATGATGAGCAAAGAAGTGGAAAGAATCTTGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGCAGATGATGGTCTTACTAAAGCTGATGAATCAGAGTCTGCTGTTGATACAAGATTATCAGCTCATGCTGACAGTGGAATGAATGAGGAGCAAAGGCAAAAGCTGAGACGCATGGAGGTTGCTTTAATCGAGTATCGCGAGTCTCTTGAAGAAAGAGGGATTAAAAATTTGGAGGAAATTGAGAATAAAGTTGCAACACACCGGAAACGACTGCAAGTGGAGTGTGGGTTATCAGATTCTGGTGAAGATGGTCAAGGCAATAAAAGAACATCTTCAGAGAGGAGGGATAGGCATGATGTCCCGAGGAAGCGACACCGCAGCCATAGTCCAAGCAATAGCCCACAGCAGAAATTATCAGGCAAAGTCAGAGATAGAGAACATGATTTAGAAAGGGACCGAGACAGACATAGAGATAGAAGTCGTGATTTTGATAGCGATAAGGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGGGAGGATCATGATAAGGAGAGAGGCAGGGACCGGGACAGGAGAAGACGGGTCAGATAA 2907 0.4534 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDLDGEKSKDGVSGPKKGSRYVPSFLPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQERDHYRDGRIVEHSISSRFDELPDDFDPSGKLPGSFDDVDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRPDGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPAVTSVPNQNSELVLTPNVPDIMVTPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDALQRWRTEPFIMIAGSGRWIPPSLPTAKSPEHEKESGPTHAGGRSRRVEPERTLTDPQRDEFEDMLRALTLERSQIKVAMGFSLDNADAAGEIVDVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVILFHSICGDAPEVEQVTSEDMVIGGKTNPDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQANSGKYPSSRRETSTEPETVGLSAWNRYGDDSQSQGKGPVPLVPTLSIPQPEIKAFTKKEKSEPVLPASKWAREDDESDDEQRSGKNLGLSYSSSGSENADDGLTKADESESAVDTRLSAHADSGMNEEQRQKLRRMEVALIEYRESLEERGIKNLEEIENKVATHRKRLQVECGLSDSGEDGQGNKRTSSERRDRHDVPRKRHRSHSPSNSPQQKLSGKVRDREHDLERDRDRHRDRSRDFDSDKGRDRHREKSGSREREDHDKERGRDRDRRRRVR* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1212 968 Coils Coil 817 837 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 99 122 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 411 447 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 908 961 - -
Lan17g1212 968 Pfam CID domain 450 578 IPR006569 -
Lan17g1212 968 ProSiteProfiles SAP motif profile. 636 670 IPR003034 -
Lan17g1212 968 SUPERFAMILY Surp module (SWAP domain) 309 389 IPR035967 GO:0003723|GO:0006396
Lan17g1212 968 SMART 558neu5 450 585 IPR006569 -
Lan17g1212 968 MobiDBLite consensus disorder prediction 61 80 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 417 447 - -
Lan17g1212 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Lan17g1212 968 MobiDBLite consensus disorder prediction 689 708 - -
Lan17g1212 968 Gene3D - 444 590 IPR008942 -
Lan17g1212 968 Pfam cwf21 domain 817 861 IPR013170 -
Lan17g1212 968 SUPERFAMILY ENTH/VHS domain 446 585 IPR008942 -
Lan17g1212 968 Gene3D - 97 269 IPR012677 -
Lan17g1212 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Lan17g1212 968 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Lan17g1212 968 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Lan17g1212 968 MobiDBLite consensus disorder prediction 744 774 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 792 822 - -
Lan17g1212 968 SMART cwf21_2 816 865 IPR013170 -
Lan17g1212 968 Coils Coil 17 37 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 862 968 - -
Lan17g1212 968 PANTHER - 5 963 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 714 822 - -
Lan17g1212 968 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Lan17g1212 968 MobiDBLite consensus disorder prediction 775 791 - -
Lan17g1212 968 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Lan17g1212 968 MobiDBLite consensus disorder prediction 11 35 - -
Lan17g1212 968 SMART rrm1_1 187 263 IPR000504 GO:0003723
Lan17g1212 968 CDD RRM_SR140 185 268 IPR035009 -
Lan17g1212 968 PANTHER RNA PROCESSING PROTEIN LD23810P 5 963 - -
Lan17g1212 968 MobiDBLite consensus disorder prediction 1 122 - -
Lan17g1212 968 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Lan17g1212 968 Gene3D - 816 867 - -
Lan17g1212 968 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1212 Lan-Chr17 20447402 20465407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1212 186 255 Eukaryotic Initiation Factors Gene Family AT3G16380 38.571 2.98e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1212 K12842 - gmx:100776093 1629.38