Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1207 ATGGCCATGCTTTTGAGAAAACTCTGCGCTTCTATGTCGTCATCATCATCGTCAAAGCGTTCCTCCGATGATTCGCCGCCGTCATCCACCACCGGAAATTCACCTCCGCCGCATCTCGGCGCATTCTACTATCTACCTGACGAAATATTGATGCAAATTCTGCGTCTATTGGACCCTAAAGATGCTGCTAAACTATGCTTCCTTTCCAAGTTATGGCGATATATTATCTCTGATAATGATCTATGGATTCATTTTCTTCAGAATTACTACCCTGATCCATGGGACTCCGTTCTCTTCGCTGAGACTAATTTGAGCTCCGGTTATCCTCTTCCGGCCACTGCTGCTGAGATGTCACATGTGTCGTTCAGGAATGTCTATGCCCAACGTGCACAACTTCCAAGTTCTGTTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTTGAGTGATCACGCATATCCATTAGGGCGATCTGCAACCTTTCTGGAATTTGGTAGCGTGGAAACGCCGATGTATACTAGACTTCGACATTTCTTTGGGACTATTTATAACAGGATGCAGGTCAAGCCAAGTTCTCAACCAGTTATTGTTTCTATACCGATTTGCCACTATGATGATACTGAATCAGCCAAAGCTTCCAGACGACAGCTTAAAGAAGCAATCTATTCTGCTCTGTTTGATATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTCTAGCTCTGTATGCTGCAAAGCAAACTTCTGGAATAGCTGTTAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGCAAAGTGATGCGTAACGTGGGTGTGGAGGTTGTGGGGATAGGAGCACTACAACTTACCGGATTCCTTAGAGAGCAGATGCAGCAGAACAACATAATTTTTGAATCATTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCTGCTGATTATGAAGCTGAGCTGTCAAAAGATACAGAAGCATCATTTGAAGCTGTTGGAGAAGGATGGTTTACTCTTTCAAAAGAGCGGTTTCAAACCGGGGAGATCTTATTCCAGCCACGTCTTGCTAGGGTGCGAGCAATGGGTTTGCACCAGGCCGTTGCTCTTTGTATGGACCATTGTCATTCTGCTGAATTAGTTGGCGATGGTGATTGGTTTAAGACTGTAGTTTTATCAGGTGGAACTGCATGTTTACCCGGTTTGCCAGAAAGGTTAGAAAAGGAACTCCATGCCTTACTTTCTCCTGAGGTGTCAAATGGAATTACAGTCATACCTCCTCCATATGGTGTGGATACAGCATGGTTTGGAGCAAAGGCTATTGGCAATGTGAGTACCTTTCCCGGGCGCTGGTGTACAACGAAGAAGCAATTCCGTCAGAATTATAAAGTCAACCGCATATGGTGA 1422 0.4416 MAMLLRKLCASMSSSSSSKRSSDDSPPSSTTGNSPPPHLGAFYYLPDEILMQILRLLDPKDAAKLCFLSKLWRYIISDNDLWIHFLQNYYPDPWDSVLFAETNLSSGYPLPATAAEMSHVSFRNVYAQRAQLPSSVIIDGGSGYCKFGLSDHAYPLGRSATFLEFGSVETPMYTRLRHFFGTIYNRMQVKPSSQPVIVSIPICHYDDTESAKASRRQLKEAIYSALFDMNVPAVCALNQATLALYAAKQTSGIAVNIGFQVTSVVPILNGKVMRNVGVEVVGIGALQLTGFLREQMQQNNIIFESLYTVRTLKEKLCYVAADYEAELSKDTEASFEAVGEGWFTLSKERFQTGEILFQPRLARVRAMGLHQAVALCMDHCHSAELVGDGDWFKTVVLSGGTACLPGLPERLEKELHALLSPEVSNGITVIPPPYGVDTAWFGAKAIGNVSTFPGRWCTTKKQFRQNYKVNRIW* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1207 473 Pfam Actin 182 459 IPR004000 -
Lan17g1207 473 MobiDBLite consensus disorder prediction 11 29 - -
Lan17g1207 473 SMART fbox_2 45 85 IPR001810 GO:0005515
Lan17g1207 473 SUPERFAMILY F-box domain 32 129 IPR036047 GO:0005515
Lan17g1207 473 SUPERFAMILY Actin-like ATPase domain 135 255 IPR043129 -
Lan17g1207 473 Pfam F-box-like 44 84 IPR001810 GO:0005515
Lan17g1207 473 PANTHER ACTIN-RELATED PROTEIN 8 94 469 - -
Lan17g1207 473 Gene3D - 182 463 - -
Lan17g1207 473 SUPERFAMILY Actin-like ATPase domain 250 460 IPR043129 -
Lan17g1207 473 Gene3D Actin; Chain A, domain 4 283 366 - -
Lan17g1207 473 SMART actin_3 133 463 IPR004000 -
Lan17g1207 473 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Lan17g1207 473 CDD NBD_sugar-kinase_HSP70_actin 136 280 - -
Lan17g1207 473 MobiDBLite consensus disorder prediction 11 35 - -
Lan17g1207 473 PANTHER ACTIN 94 469 IPR004000 -
Lan17g1207 473 Gene3D - 240 438 - -
Lan17g1207 473 Gene3D - 38 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1207 Lan-Chr17 20392175 20399980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1207 182 458 Cytoskeleton Gene Families AT5G09810 31.228 1.39e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1207 K16616 - gmx:100804254 697.582