Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1203 ATGGATTCTGAAGCCAATGATAAGAACACCGTCTTCAGAAAACTAAAGGCCAAACCCCAAAATAAGATGTGTTTTGATTGCAATGCGAAGAACCCTAATTGGGCATCGGTCACATATGGGATCTTTCTCTGCATTGATTGCTCCGCTTTTCATCGCAGTCTCGGCGTCCACATCAGCTTTGTCAGATCTACGAATTTAGACTCATGGAGCCCCGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAGCATGGCTGGACTGATGGTGGTAAAACAGAGGCAAAGTACACATCCAGAGCTGCTGAGTTGTATAGGCAACTTCTTTCAAAAGAGGTAGCTAAAAGTATGGCTGAGGAGGCTATTGTTGCATCCTCACCTTTTACTTCTCAGTCTGCTCAAGGGGCTAACGGACTTCCTGAAGTCAAGACCAATGAAGCACCAAAACAGAACACTCTGGAGAAGCCTGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCGTATACAGCAGTTTCCAGTACCATCAAGAAGCCTATTGGTGCTAAAAAACCTGGGAAGAGTGGGGGACTTGGTGCCCGTAAACTCAGTAGAAAGCCAAGCGAGTCTCTCTATGAGCAAAAGCCTGAAGAAGTACCTTCTCCGATAGTTACATCATCGACAAACAACAATTTGTCTGATGGGCCATCTTTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTCAATTCTGAAGGTTCACATGCAACTGGTCATGTCTCTGCTCCAAAGTCAACAAGCTTCTTTTCAGATTTTGGAATGGATAGTAGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATTCAGGAATCTGATGTAGCGAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGACCAGGACAAAGCAGATGTGGAGGCTAAAGCTACACTGTCAAAGTTTTCAGGTTCGACTGCCATCTCTAGTGCTGATCTATTTGGCGACTCGAGAGATAACTCCTCTGTTGACATTACTGCTAGTGACCTCCTCAATCGTCTATCTTTCCAGGCACAACAAGATATCTCTTCCCTTAAAGGCATTGCTGGAGAGACAGGAAAGAAACTCAGTTCTTTAGCTTCCAGTTTCATGACAGATCTGCAGGACCGAATCCTCTAA 1215 0.4379 MDSEANDKNTVFRKLKAKPQNKMCFDCNAKNPNWASVTYGIFLCIDCSAFHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKTEAKYTSRAAELYRQLLSKEVAKSMAEEAIVASSPFTSQSAQGANGLPEVKTNEAPKQNTLEKPEKPESTSSPRASYTAVSSTIKKPIGAKKPGKSGGLGARKLSRKPSESLYEQKPEEVPSPIVTSSTNNNLSDGPSLTSRFEYVENVQSSEFNSEGSHATGHVSAPKSTSFFSDFGMDSSFPKKSGPSSSKVQIQESDVARKKFSNAKSISSSQFFGDQDKADVEAKATLSKFSGSTAISSADLFGDSRDNSSVDITASDLLNRLSFQAQQDISSLKGIAGETGKKLSSLASSFMTDLQDRIL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1203 404 MobiDBLite consensus disorder prediction 132 154 - -
Lan17g1203 404 SMART arf_gap_3 9 125 IPR001164 GO:0005096
Lan17g1203 404 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Lan17g1203 404 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Lan17g1203 404 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lan17g1203 404 Gene3D Arf GTPase activating protein 1 138 IPR038508 -
Lan17g1203 404 MobiDBLite consensus disorder prediction 220 241 - -
Lan17g1203 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 127 IPR001164 GO:0005096
Lan17g1203 404 CDD ArfGap_ArfGap2_3_like 7 122 - -
Lan17g1203 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 404 - -
Lan17g1203 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 5 404 - -
Lan17g1203 404 SUPERFAMILY ArfGap/RecO-like zinc finger 10 123 IPR037278 -
Lan17g1203 404 MobiDBLite consensus disorder prediction 132 241 - -
Lan17g1203 404 Pfam Putative GTPase activating protein for Arf 10 113 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1203 Lan-Chr17 20332664 20337238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1203 1 82 C2H2 Transcription Factor Family AT3G07940 44.578 3.05e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1203 K12493 K11855 gmx:100785169 641.728