Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1194 ATGGCCATGACCACAAAAGATCATAGCCTAGATGATGAGCTAGGGTTCTTGCAAGAAAACCATTCATGGGGATTCTCCAATTATGATAACATGGGTGAGACAAAAGAGAAGTTACAAATCCAAGTATTGAATGAGGAAGAAGGAAATGAAGGAGAGAATGGTAAGAATGTAATTGGTGAAAGGAAAAATGAGAAGTGTAATGAATGTGATAATGGAAAAATTATGTGGTCTGAGAAAGAAAGGAGGAAGAAGATAGGGAGTTTATTTGCAACTCTTCATGATTTGCTTCCACACCTCCCTTCTAAGGCAAACAAATCAACCATTGTAGATGAAACAATAAGTTACATTGAAAGTCTAAAGCAAACTTTGGAAAAGTTAGAGAAAGAAAAGAAAGAAAGACTTCAATCTCTATTCACTTTTGGAGTTCATCCATCTATAATCAATTCATCACAATGGTACCCTAATGACTCTACAAATGCAAATGCAAATGGAAACTCCAACACTTCAACTTCAATAATACCTTCAACCCCTACAAAGTTAGTAGCATTTGAAACATGGTCTTCTCCAAATTTGGTATTGAATATTTGTGGAAATGAAGCACAATTTTGCATATTGGCAACTAGGAAGCAAAACATCTTGACCACTATTGCTTTAGTGTTAGAGAAGCACCAAATAGATGTTATATCAGCCAGCATTTTGAGCAATGGTCATGGAAACCAATACACAATTTTGGCCCATGCAAATGAAAGTTCATATCAATTGAGCCCAGAGACTACTTTAGTGGGGGACATTTACAAGCAAGCTGCTGAAGAAATTATTCAATTGATCTCTTAA 834 0.3573 MAMTTKDHSLDDELGFLQENHSWGFSNYDNMGETKEKLQIQVLNEEEGNEGENGKNVIGERKNEKCNECDNGKIMWSEKERRKKIGSLFATLHDLLPHLPSKANKSTIVDETISYIESLKQTLEKLEKEKKERLQSLFTFGVHPSIINSSQWYPNDSTNANANGNSNTSTSIIPSTPTKLVAFETWSSPNLVLNICGNEAQFCILATRKQNILTTIALVLEKHQIDVISASILSNGHGNQYTILAHANESSYQLSPETTLVGDIYKQAAEEIIQLIS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1194 277 Coils Coil 109 136 - -
Lan17g1194 277 Pfam Helix-loop-helix DNA-binding domain 78 119 IPR011598 GO:0046983
Lan17g1194 277 CDD bHLH_AtbHLH_like 75 121 IPR045239 -
Lan17g1194 277 PANTHER TRANSCRIPTION FACTOR BHLH95 45 273 - -
Lan17g1194 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 119 IPR011598 GO:0046983
Lan17g1194 277 Gene3D - 75 139 IPR036638 GO:0046983
Lan17g1194 277 PANTHER - 45 273 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lan17g1194 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 144 IPR036638 GO:0046983
Lan17g1194 277 SMART finulus 75 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1194 Lan-Chr17 20256465 20258921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1194 13 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.115 2.62e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g1194 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1194 - - lang:109331893 496.123