Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1192 ATGGGGTGGGGTCACCTTGGCCGGATTCCAAGTAGTAGTGCAGATGCAGGTCCCACCACCACCACCACCACCGAGCCACGGCGGTTCCCACTGGCGGCTCAGCCGGAAGTGATGCGTGCCGCCGAGAAGGACGATCAGTATGCTTCTTTTGTTTATGAAGCCTGCCGTGACGCCTTTCGCCACCTCTTCGGTACTAGAGTTGCAGTTACCTACCAAAATGAGACTAAGCTTTTAGGGCAGATTCTATACTATGTGCTTACAACCGGCTCGGGACAACAGACGTTAGGAGAGGAATATTGTGATATCACTCAGGTTGCTGGATCTTATGGACTTCCTCCAACCCCTGCGAGACGCACTCTTTACATTGTATACCAGACCGCTATTCCATATATTGCAGAACGAATAAGTTCTAGACTTGCTTCCCGTGGCATTATGCTTGCTGATTCTGAGTCTGCCGAGAGTTACAATGAAAATGCCCCCAGGAGCAGTAGTTCTCAGATTTCTACCTCGAGTGAACTTCCTTCTTCTTCTTCCACATTAGGACAATACATTCCAACTCTAACGAGGTTGAAGGAAAAACTGAGTGGATTTTGGTTGCATACGATTCAGAGGTGGCCTGCGATGCTCCCTATTGTTCGTGAGTTGCTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTCTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCAAGCATTCGTTATGTGTTCATCGGAAAAGCATCTAATCAAAGACCAAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGGGTTGCGTCGAAGAAATTTGACTTCAATTGCTGGTTCAGTAAATCAAGCATCCTTTGCAAACTACCATAGAACACCAGGCCATGATTTACCTATTTTAAACGAAGAAGGTGCTCTGGCATCTCCAGATGCTGACAAAGGAACTTTGGTCTCTGAATCTTCATCTCCCGAGTACCATGCAACTGGCGGGGCTAGCAAATGCACACTATGCCTGAGTGATCGTCAACATCCAACGGCTACTTCATGCGGCCATGTATTCTGCTGGAGCTGTATCGCAGAATGGTGCAATGAAAAGCCAGAATGCCCTCTTTGCCGCACACCGATAACACACTCAAGTCTAGTTTGTGTGTACCATTCCGACTTCTAG 1191 0.4694 MGWGHLGRIPSSSADAGPTTTTTTEPRRFPLAAQPEVMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQNETKLLGQILYYVLTTGSGQQTLGEEYCDITQVAGSYGLPPTPARRTLYIVYQTAIPYIAERISSRLASRGIMLADSESAESYNENAPRSSSSQISTSSELPSSSSTLGQYIPTLTRLKEKLSGFWLHTIQRWPAMLPIVRELLQLLLRANLMLFYFEGLYYHISKRAASIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEGLRRRNLTSIAGSVNQASFANYHRTPGHDLPILNEEGALASPDADKGTLVSESSSPEYHATGGASKCTLCLSDRQHPTATSCGHVFCWSCIAEWCNEKPECPLCRTPITHSSLVCVYHSDF* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1192 396 ProSiteProfiles Zinc finger RING-type profile. 342 380 IPR001841 -
Lan17g1192 396 MobiDBLite consensus disorder prediction 316 336 - -
Lan17g1192 396 MobiDBLite consensus disorder prediction 322 336 - -
Lan17g1192 396 Pfam Zinc finger, C3HC4 type (RING finger) 340 385 - -
Lan17g1192 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 393 IPR013083 -
Lan17g1192 396 MobiDBLite consensus disorder prediction 155 178 - -
Lan17g1192 396 MobiDBLite consensus disorder prediction 13 28 - -
Lan17g1192 396 Pfam Pex2 / Pex12 amino terminal region 44 278 IPR006845 -
Lan17g1192 396 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 25 393 - -
Lan17g1192 396 CDD RING-HC_PEX10 341 380 - -
Lan17g1192 396 PANTHER PEROXISOME BIOGENESIS FACTOR 10 25 393 - -
Lan17g1192 396 SMART ring_2 342 379 IPR001841 -
Lan17g1192 396 SUPERFAMILY RING/U-box 341 385 - -
Lan17g1192 396 MobiDBLite consensus disorder prediction 1 31 - -
Lan17g1192 396 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1192 318 392 C3H Transcription Factor Family AT4G28270 31.868 2.46e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1192 K13346 - gmx:100783914 647.506