Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1185 ATGTTGAAGCTCCATAGAATGTTGGCTTCTTCTAGGTCTAGGCATGGTTTATTGGACAAAGCTATCTCATTTAACAAACCCAGTGTCACACATCACTTTTCTACCTCTTCACATGCCACAGTTGCAGGATATAATTCAAATCGAATACTTGCTCCTTATTCTGTTTACAAGGGAAAAGCTGCTTTCTCTTTAACTCCTTCTCTTCCAACTTTCACTAAGTTACATTCTGGTGCTGTTGTTGTTGATCGTCGTGGTTCAATAATGGTGATTTTTATGCATGCTATTGGGGACCGTAAATATGACTGGGAGAATAGACAGAGATTTGCTCTCTCTGCGACTGAAGTTGGCTCTTTGCTAACCATGGGCCCTCAAGATTCATGTGAATTCTTTCATGACCCCTCAATAAAATCAAGTAATGCTGGTCAAGTAAGGAAGAGTCTATCTATTAAGCCTCATGCAAACAGCAATGGCTACTTTATGAATTTGACTGTTGTCAACAACCTATTAAATACAAAGGAATTCTTTAGTGTTCCGGTCACAGCTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGGACAAAATGACTCATCAGCAGTCCACAGGCGGCACGGTTGGTCTTCAATCAAAGGTGGTGGGGCAACAAGTTTTCGAATCTGAATGGGACAAGTGA 699 0.4134 MLKLHRMLASSRSRHGLLDKAISFNKPSVTHHFSTSSHATVAGYNSNRILAPYSVYKGKAAFSLTPSLPTFTKLHSGAVVVDRRGSIMVIFMHAIGDRKYDWENRQRFALSATEVGSLLTMGPQDSCEFFHDPSIKSSNAGQVRKSLSIKPHANSNGYFMNLTVVNNLLNTKEFFSVPVTAAEFAVMKTACSFALPHIMGWDKMTHQQSTGGTVGLQSKVVGQQVFESEWDK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1185 232 Pfam Whirly transcription factor 55 189 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lan17g1185 232 Gene3D Transcriptional Coactivator Pc4; Chain A 40 211 IPR009044 GO:0003677|GO:0006355
Lan17g1185 232 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 16 232 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lan17g1185 232 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 16 232 - -
Lan17g1185 232 SUPERFAMILY ssDNA-binding transcriptional regulator domain 46 208 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1185 Lan-Chr17 20067088 20069780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1185 1 232 Whirly Transcription Factor Family AT1G71260 52.653 8.77e-85 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lan17g1185 Whirly 3.5e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1185 - - var:108343725 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1185 17 20067088 20069780 Lan6g1238 6 12637863 12639692 LSH