Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1180 ATGAATGATAGTAATCAAGGGACTTTCATCATGGGTATTCCACAAACTCCAAACCCTTCTCCTTCACATCTATATCCACATGAAATTCAGCTTAAACTTTACCAAGCTTTCATATTTTCCATTCCAATACTCTTTACTATAATTCTAGTTCTCTTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCATCTCTCTCATCATCTCCTTTTCATATACTTCCTAGGAGGTCCAATCCTCAAACTACATATCATTATTCTTCCTCAGTATATCGTTTAGATTATCTCACGGTACAATTTCTGGACAAACTTCCAAGAGTTCTATTTGATGACGATTTGAGAGCAAGGGATTCATTATGTTGTGTTTGTCTGGGAGAATTTGAGTTGAAAGAAGAGCTGCTTCAGATTCCTCATTGCAAGCACATGTTTCACATAGAGTGCATACATAACTGGCTCAAAGCTAACATCACATGCCCACTTTGTAGATGTTCCATCATCCCAACCACTACTACTAAGTTCCTTAGTCCTACAGACTCAGCACAACAAGGTGGTGTCATTTCAGGCTCTCCATCACATATCATATTATTGCCTCCTCAACTAGAAGATGAAGCAAGTGCTTCCTCAAATAATACTCATATTTTAGGGGAATGA 648 0.3812 MNDSNQGTFIMGIPQTPNPSPSHLYPHEIQLKLYQAFIFSIPILFTIILVLLFYLFYLKRRASSLSSSPFHILPRRSNPQTTYHYSSSVYRLDYLTVQFLDKLPRVLFDDDLRARDSLCCVCLGEFELKEELLQIPHCKHMFHIECIHNWLKANITCPLCRCSIIPTTTTKFLSPTDSAQQGGVISGSPSHIILLPPQLEDEASASSNNTHILGE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1180 215 SMART ring_2 119 160 IPR001841 -
Lan17g1180 215 SUPERFAMILY RING/U-box 97 167 - -
Lan17g1180 215 Pfam Ring finger domain 119 161 IPR001841 -
Lan17g1180 215 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 170 - -
Lan17g1180 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 13 170 - -
Lan17g1180 215 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Lan17g1180 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 166 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1180 Lan-Chr17 19996142 20000576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1180 13 166 C3H Transcription Factor Family AT4G10150 40.909 3.00e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1180 K19039 - gmx:100806554 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1180 17 19996142 20000576 Lan18g0159 18 1315889 1318080 LSH
Lan17g1180 17 19996142 20000576 Lan6g1205 6 12155170 12158176 LSH