Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1162 ATGGGTAGTTGCTTAAGCATTGATGAAGTTAACACAAATGGTAGTACAAAACCTAAGCCTTCAGGTAGTTCAGTAGGACATGAATCTTCGTCTAAATCAACAACTTCGATGAATATCAAAGATCTGCGAGAAAGTGCTGGATACAGCAATGTTGATATTTTCAGTTATGAAGAATTGAGGCTCGCTACGAAGCATTTTCGCCCTGATTTGATCTTAGGAGAAGGTGGTTTTGGAGTTGTGTATAAAGGAGTCATAGATGATAGTGTCAGATCAGGTTATAAGTCAATTCAAGTCGCCATTAAGGAGCTTAATCGCGAAGGTTTTCAAGGTGATAGGGAATGGCTTACTGAAGTTAACTATTTAGGTCAATTTAGTCACTCAAACCTTGTGAAGCTCATTGGATACTGCTGTGAGGATGATCACAGGTTATTGGTCTATGAATACATGGCAAATGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACACTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAAAGGGCTTGCTTTTCTCCATGGTGCAGAAAGGCCCATCATATATCGGGACTTCAAGACATCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGACCAATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTACGTCATGACTGGGCATTTGACAGCTCGAAGCGACGTGTATGGTTTTGGTGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGACCCAGCCGAGAGCATAACTTGGTTGAGTGGGCACGCCCGCTATTGAATAACAAAAAGGTAGTGAGAATATTAGATCCTAAAATGGACGGGCAATATTCCTCTAAAAATGCGATACGGGTGGCTCATCTAGCTTACCAATGCCTTAGCCAAAACCCGAAAGGAAGACCTCTAATGAGCCAGGTTGTTGAATTTCTTGAAAATTATCAGCCAGAGGGGGGAAATGTAGATCAAATGCCTCGAAGTGGAAGTAGCAGTGTAACCATTTATGAAGTTCCAAAGGGCAGCGATGACACTACAACTGAAGTGAAAAAGCAAAACTAA 1152 0.421 MGSCLSIDEVNTNGSTKPKPSGSSVGHESSSKSTTSMNIKDLRESAGYSNVDIFSYEELRLATKHFRPDLILGEGGFGVVYKGVIDDSVRSGYKSIQVAIKELNREGFQGDREWLTEVNYLGQFSHSNLVKLIGYCCEDDHRLLVYEYMANGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNNKKVVRILDPKMDGQYSSKNAIRVAHLAYQCLSQNPKGRPLMSQVVEFLENYQPEGGNVDQMPRSGSSSVTIYEVPKGSDDTTTEVKKQN* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1162 383 MobiDBLite consensus disorder prediction 348 383 - -
Lan17g1162 383 CDD STKc_IRAK 72 344 - -
Lan17g1162 383 SUPERFAMILY Protein kinase-like (PK-like) 46 343 IPR011009 -
Lan17g1162 383 MobiDBLite consensus disorder prediction 351 371 - -
Lan17g1162 383 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Lan17g1162 383 ProSiteProfiles Protein kinase domain profile. 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1162 383 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 23 381 - -
Lan17g1162 383 Pfam Protein tyrosine and serine/threonine kinase 71 342 IPR001245 GO:0004672|GO:0006468
Lan17g1162 383 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Lan17g1162 383 MobiDBLite consensus disorder prediction 1 38 - -
Lan17g1162 383 PANTHER OS01G0588500 PROTEIN-RELATED 23 381 - -
Lan17g1162 383 Gene3D Phosphorylase Kinase; domain 1 40 148 - -
Lan17g1162 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1162 Lan-Chr17 19534360 19540553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1162 27 378 Glycoside Hydrolase AT3G07070 46.797 7.67e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan17g1162 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1162 - - lang:109349878 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1162 17 19534360 19540553 Lan6g1191 6 11986825 11996805 LSH