Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1159 ATGGCACTGATTATCAGTGTTGTTAATAGTAATATTAGACCATGTTGGATCATAACATTCTTCCTTCTTCTATGTCTTGCTGTTGGTTCTTATAGGGATACAGACTCAGAGTTGCTACTAAAGTTTAAGGACAAGTTACAAAACAATGATGCATTGTCCTCATGGGATCTATCAACAACTCCTTGTTCAGATCATGGTGATAATAATTGGGCTGGTGTTATTTGTAAGGAAGGAAAAATAAGGGGATTGCAACTTGAGAATATGGGGTTAAAGGGTGACATTGATGTGGAATCTCTCAAGGAGTTACAATTTCTTAGAACCATAAGTTTCATGAATAATGATTTTGATGGCAGAATACCAGAAATAAACAAGGTAGTTGGTTTGAAGTCACTTTATCTTTCTAACAATAAGTTCTCTGGGGAGATTCCTGCTCATTTTTTTGAGGGCATGCAATGGTTGAAGAAAATTCATTTGTCAAATAATCAGTTTAGTGGTGTTATTCCAAGTTCTTTGATAAAGTTGTCAAGGCTTTTGGAGTTAAGGTTGGATGGAAACAAATTCAGTGGCCCTATTCCCCTTTTTCAACAGAAAGCTTTGAGATCATTTAGTGTAGCTAATAATCAGTTGCAGGGAAATATACCTGCCAACCTTAGTAAGATCCCAGTCGCTGCCTTTTCTGGTAATGAAGGGTTATGTGGAGCTCCATTGGATGCATGTGCTACTACTCCTGCTCATCATTCCAAGAAGCCCAAGAAGCCCTCAAATACCACCATTATTGTGATTGCAATAGTTGTGTTTTTGGCAGTGATATGTGTGATTGGAGCAGTGATATTCTTCCTTCGCCGTAAAAGAAAAAGAAAAGCAACAACTTCCATAGAGAATCCACCTTCAGGCCCTAATAACAAAAAGGGAGTGAAAGAAGGAGGTGATGAGAGTCAAAGATTATCAAGCTCCAACCACAGCAGAAGAGGGGATAATAATAATAATAATAATAATAATAATAACATGAAGTTATGCTTCATAAGTGATGATAGAGATAGGTTTGATTTGCATGAGTTGTTAAGAGCATCTGCTGAGATTTTGGGTAGTGGTTGTTTTAGTTCTTCTTATAGGGCTTCATTGGTGAGTGGAGCAAAGGTAGTGGTGAAGAGATTCAAGCAAATGAATAATGTTGGGAAGGAAGAGTTTCATGAGCATATGAGAAGGATTGGAAGGTTGAATCATCCTAACTTGCTTCCTCTTGTGGCTTATTATTATAGAAAGGAAGAGAAGCTCTTGGTTTCTGACTATGTTCAGAATGGCAGCCTTGCTGTTCGCCTTCATGGACACCAAACTCTAGGGGAACCAAGCCTTGATTGGCCAATCCGGTTGAAGATTGTAAAAGGCATAGCATATGGTCTTGAATATCTATACAAAGATATGCCAAGCCTAATTGCACCCCATGGAAACCTTAAATCCTCTAATGTTCTTCTAACTCAATCTTTGGAGCCACTCCTAAGTGACTATAGCTTGGTCCCTGTGACAAACCAGGACCTAGCTCAAGACATCATGGTAATATACAAATCTCCTGAGTACTTGCACCATGGAAGAATCACAAAGAAGAGTGATGTGTGGTGCCTTGGGATACTAATATTGGAGATCATGGTTGGCAAGTTCTCTTCAAACTACTTGCAAAAGGGTAAAGGAAGTGAGTTAAGTTTGGTAAATTGGGTCCTTTCAGTTGCACCAGAAGAGTGGAGCAATGAAGTGATTGATAAAGATATGGGTGGAACAAGGAACAGTGATGGAGAGATGGTGAAGCTTTTGAAGGTTGCATTGGGTTGTTGTGAAGTGGATGTGGATAAGAGAATGGATTTGAAAGAAGCAGTAGAGAAAATCCAAGAGTTGAAAGAGAGAGACCATGATGATGATTTTTATACATCTTATGCTAGTGAAGCAGATATGAGATCTTCAAGGGGATTATCTGGTGAAATCAATTTCTGGCCAGTGAATAATTGA 1998 0.3874 MALIISVVNSNIRPCWIITFFLLLCLAVGSYRDTDSELLLKFKDKLQNNDALSSWDLSTTPCSDHGDNNWAGVICKEGKIRGLQLENMGLKGDIDVESLKELQFLRTISFMNNDFDGRIPEINKVVGLKSLYLSNNKFSGEIPAHFFEGMQWLKKIHLSNNQFSGVIPSSLIKLSRLLELRLDGNKFSGPIPLFQQKALRSFSVANNQLQGNIPANLSKIPVAAFSGNEGLCGAPLDACATTPAHHSKKPKKPSNTTIIVIAIVVFLAVICVIGAVIFFLRRKRKRKATTSIENPPSGPNNKKGVKEGGDESQRLSSSNHSRRGDNNNNNNNNNNMKLCFISDDRDRFDLHELLRASAEILGSGCFSSSYRASLVSGAKVVVKRFKQMNNVGKEEFHEHMRRIGRLNHPNLLPLVAYYYRKEEKLLVSDYVQNGSLAVRLHGHQTLGEPSLDWPIRLKIVKGIAYGLEYLYKDMPSLIAPHGNLKSSNVLLTQSLEPLLSDYSLVPVTNQDLAQDIMVIYKSPEYLHHGRITKKSDVWCLGILILEIMVGKFSSNYLQKGKGSELSLVNWVLSVAPEEWSNEVIDKDMGGTRNSDGEMVKLLKVALGCCEVDVDKRMDLKEAVEKIQELKERDHDDDFYTSYASEADMRSSRGLSGEINFWPVNN* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1159 665 SUPERFAMILY Protein kinase-like (PK-like) 359 629 IPR011009 -
Lan17g1159 665 SUPERFAMILY L domain-like 51 233 - -
Lan17g1159 665 MobiDBLite consensus disorder prediction 288 335 - -
Lan17g1159 665 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
Lan17g1159 665 Gene3D Ribonuclease Inhibitor 194 239 IPR032675 -
Lan17g1159 665 MobiDBLite consensus disorder prediction 311 335 - -
Lan17g1159 665 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Lan17g1159 665 ProSiteProfiles Protein kinase domain profile. 355 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g1159 665 Gene3D Phosphorylase Kinase; domain 1 320 430 - -
Lan17g1159 665 Pfam Protein tyrosine and serine/threonine kinase 359 623 IPR001245 GO:0004672|GO:0006468
Lan17g1159 665 Gene3D Transferase(Phosphotransferase) domain 1 431 648 - -
Lan17g1159 665 PANTHER LRR RECEPTOR-LIKE KINASE 15 642 - -
Lan17g1159 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 642 - -
Lan17g1159 665 CDD TM_EGFR-like 252 287 - -
Lan17g1159 665 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1159 Lan-Chr17 19475888 19479554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1159 22 657 Receptor kinase-like Gene Family AT5G35390 51.235 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lan17g1159 PK_Tyr_Ser-Thr 1.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1159 - - gmx:100804368 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1159 17 19475888 19479554 Lan18g0151 18 1229340 1232803 LSH
Lan17g1159 17 19475888 19479554 Lan6g1187 6 11958002 11961852 LSH