Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1155 ATGCCTCTATCACTACCACTCCATTCTCCTCTTCCCAACACTTCTTTATTTCTCCCTTTATCATCTCACCCACCCAATTTCACTTTATCTACTCTCCCTACTATTAACCTCCACCGCCGCCGCCGCATCAACCACCACCACCGTTCCTTAACCACCACCACAACCATAAGAGCCAGTGTAATTCAATACGATACGACCCAACAACAGCCTCTGCTTCAAGTCAACGATCTGAAGGCTAAGATCGTTGAAAACGGTGTCGAGATTCTTCATGGCGTTAACCTCACTGTTAACCAAGGAGAAGTTCATGCCATCATGGGGAAGAATGGTTCTGGAAAGAGTACTTTTGCTAAGGTTCTTGTTGGCCACCCGGAGTACGAAGTTACCGGAGGCAGCGTCGTGTTTAAAGGGGAGAATTTGCTTGACATGGAACCCGAGGAAAGATCCCTTGCTGGTCTTTTTATGAGCTTCCAATCCCCTGTTGCGATTCCTGGTGTTTCTAATGATGAGTTTCTAGTCATGGCTTACAATGCTCGAAGAAGAAAGCTTGGCCTCCCTGAGCTTGGACCACTAGAGTGCTTTTCTTACCTGATGGAGAAACTCAAACTTGTTAACATGAAACCTGACTTTCTCAATAGGAATGTCAACGAAGGATTTAGCGGTGGTGAACGCAAACGCAATGAGATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGACGAAATTGATTCTGGATTGGATGTTGATGCACTTAGAGATGTAGCAAATGCAGTCAACCAGCTTCTGACCCCAAAGAATTCTCTGTTGATGATAACTCATTATCGACGACTTCTCGATCTCTTAAAGCCTACACATGTCCATGTTATGGAGAAAGGGAAAATTGCAAGGACAGGCGACATATCTCTGGTAGCAGTTATTGAGGATAGTGGATATGAAACCGTCTCTGCTTTAACTTAG 963 0.4517 MPLSLPLHSPLPNTSLFLPLSSHPPNFTLSTLPTINLHRRRRINHHHRSLTTTTTIRASVIQYDTTQQQPLLQVNDLKAKIVENGVEILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPEYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVAIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNQLLTPKNSLLMITHYRRLLDLLKPTHVHVMEKGKIARTGDISLVAVIEDSGYETVSALT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1155 320 ProSitePatterns ABC transporters family signature. 218 232 IPR017871 GO:0005524
Lan17g1155 320 Pfam ABC transporter 89 243 IPR003439 GO:0005524
Lan17g1155 320 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 318 IPR003439 GO:0005524
Lan17g1155 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 302 IPR027417 -
Lan17g1155 320 SMART AAA_5 98 295 IPR003593 -
Lan17g1155 320 Gene3D - 71 318 IPR027417 -
Lan17g1155 320 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 62 317 IPR010230 GO:0005524
Lan17g1155 320 CDD ABC_FeS_Assembly 72 313 IPR010230 GO:0005524
Lan17g1155 320 TIGRFAM sufC: FeS assembly ATPase SufC 72 315 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1155 Lan-Chr17 19378769 19383834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1155 86 300 Calmodulin-binding Proteins AT2G36910 25.778 4.13e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1155 K09013 - gmx:100798005 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1155 17 19378769 19383834 Lan6g1182 6 11908824 11912588 LSH