Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1113 ATGGCAACGACAGGGTCACCGAACCACCCTACCGATGATGGCGCCGTCATCGATCTAACGCCGCTCCTCGAAAATTCCGGCAACTCCTCCGACGAATCCAACTCCGGCCGCCGATTCTCGCGGCGAGAAGGGTTGCGGCAAGCTGCTCGGTTCCTCCGTCAAGCGAGCGGGCAGAGGACGATGCGTGAGCCGTCGATGGTGGTGAGAGAGACGGCGGCGGAGCAATTGGAGGAGCGGCAGAGTGATTGGGCTTATTCGAAACCAGTGGTTGTTTTCGATATACTCTGGAACTTCGCGTTCGTCGTTACCACCGCTTCGGTGCTGGTTCTGAGTGTGAACGAAACTCCGAGCATGCCGTTGAGGTTTTGGCTTCTTGGTTATGTTCTGCAGTGCGTGCTTCACGTGGTTTGTCTTTGTGTTGAGTATCGGAGACGGAGGAGGAACCGGAGGGAAGGATCGAGCAACGCCACAGCACAAGGCGGCGTTGGAGGCAGCGAGGATTTGAGCTCTAGTTCTATTGAAGGTTCTGGACAGCATAGATTGGTGCCTCAATTGGATGAAGAGGCTACAAGCATGGCGAAGCATTTGGAATCTGCCAACACAATATTTTCATTTATTTGGTGGGTTGCTGGATTCTATTGGGTTTCAGGTGGTGGTGACGGTTTGGCCCAAGATTGTCCTCTGCTTTACTGGTTATGCATAGCCTTCCTCTGTTTTGATGTTTTATTTGTCGTTTTCTGTATTGTACTGGCCTGCTTCGTTGGCCTTGCCATTTGCTGTTGCCTTCCATGTATCATTACACTTATGTATGCAGTTGCAGACCAGGATGGGGCATCAAAAGGAGAAATTGAGCATTTGTCAAAATTCAAATTCCGAAGAATTGAAAATGATGAGAAACTTGCTGGTAATACCGAAGGACCTGCTGGAGGAATAATGACTGAATGCGTGGCTGATTCACCTATTGAACGTGTACTTTCGGATGAAGATGCAGAATGTTGTATCTGTCTTTCAGCATATGATGATGGGGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGCGTCGATAAATGGCTGTATATTAATGCTACTTGCCCTCTTTGCAAGTATAACATCTTAAAAAGTACCAGCTATGGTGATGAGGAAGTGTAG 1164 0.4871 MATTGSPNHPTDDGAVIDLTPLLENSGNSSDESNSGRRFSRREGLRQAARFLRQASGQRTMREPSMVVRETAAEQLEERQSDWAYSKPVVVFDILWNFAFVVTTASVLVLSVNETPSMPLRFWLLGYVLQCVLHVVCLCVEYRRRRRNRREGSSNATAQGGVGGSEDLSSSSIEGSGQHRLVPQLDEEATSMAKHLESANTIFSFIWWVAGFYWVSGGGDGLAQDCPLLYWLCIAFLCFDVLFVVFCIVLACFVGLAICCCLPCIITLMYAVADQDGASKGEIEHLSKFKFRRIENDEKLAGNTEGPAGGIMTECVADSPIERVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSTSYGDEEV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1113 387 MobiDBLite consensus disorder prediction 151 176 - -
Lan17g1113 387 CDD RING-H2_RNF111_like 331 375 - -
Lan17g1113 387 PANTHER TARGET OF ERK KINASE MPK-1 3 387 - -
Lan17g1113 387 SUPERFAMILY RING/U-box 322 379 - -
Lan17g1113 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 385 IPR013083 -
Lan17g1113 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Lan17g1113 387 MobiDBLite consensus disorder prediction 153 176 - -
Lan17g1113 387 SMART ring_2 332 372 IPR001841 -
Lan17g1113 387 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 387 - -
Lan17g1113 387 MobiDBLite consensus disorder prediction 1 43 - -
Lan17g1113 387 Pfam Ring finger domain 331 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1113 Lan-Chr17 18242602 18250270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1113 26 378 C3H Transcription Factor Family AT1G68070 48.603 1.18e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1113 - - gmx:100779757 527.324