Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1110 ATGGCATCCTCATCATCAGTTAGCTACGATGTGCCATGGGTTGAGAAGTACCGTCCCAGCAAGGTCGTCGACATTGTCGGTAACGAGGACGCTGTCTCAAGGCTCCAAGTCATCGCTCGTGATGGCAACATGCCCAACCTCATTCTCTCCGGTCCTCCTGGAACTGGGAAAACGACTAGCATTCTCGCTCTTGCACATGAACTTCTTGGACCTAATTGCAAGGAAGCTGTCCTCGAATTAAATGCATCTGATGACAGAGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCACAAAAGAAAGTGACGCTGCCTCCTGGCCGACACAAAGTAGTGATACTGGATGAAGCTGACAGCATGACATCAGGAGCTCAGCAAGCCTTGAGAAGGACTATGGAGATATACTCTAATTCTACTCGTTTTGCTCTTGCATGCAACACGTCGTCTAAAATTATTGAACCGATTCAGAGTAGATGTGCCATTGTGCGGTTTTCACGATTATCTGATCAAGAGATACTTGGCCGCCTCATGGTAGTAGTTCAAGCTGAGAAGGTTCCGTATGTTCCTGAGGGCCTTGAAGCCATCATTTTCACAGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATTCAGTGGATTCCAGTTTGTTAACCAGGCAAATGTTTTCAAGGTTTGTGACCAGCCGCATCCATTGCATGTGAAGAATATGGTGCGCAATGTGATCGACGGGAATTTTGACGGGGCTTGTTTGGGTCTCAAGCAACTGTATGATTTAGGATATTCTCCAACTGATATCATCACAACACTTTTTCGTATAATAAAAAATTATGACATGGCTGAGTACCTGAAACTGGAATTTATGAAGGAAGCTGGGTTTGCTCATATGAGAATTTTGGATGGAGTTGGTTCTTACCTTCAGATGTGTGGTTTGTTGGCTAAACTTTCTCTAGTTCGTGAAACAGCTAAAGCTGCTTGA 990 0.4444 MASSSSVSYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIDGNFDGACLGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEAGFAHMRILDGVGSYLQMCGLLAKLSLVRETAKAA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1110 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 230 IPR027417 -
Lan17g1110 329 Pfam Replication factor C C-terminal domain 233 318 IPR013748 -
Lan17g1110 329 SMART AAA_5 43 169 IPR003593 -
Lan17g1110 329 CDD HLD_clamp_RFC 168 230 - -
Lan17g1110 329 Gene3D - 233 325 - -
Lan17g1110 329 CDD AAA 26 163 - -
Lan17g1110 329 Gene3D - 169 232 - -
Lan17g1110 329 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 327 - -
Lan17g1110 329 Gene3D - 4 168 IPR027417 -
Lan17g1110 329 Pfam ATPase family associated with various cellular activities (AAA) 47 165 IPR003959 GO:0005524|GO:0016887
Lan17g1110 329 SUPERFAMILY post-AAA+ oligomerization domain-like 232 323 IPR008921 GO:0003677|GO:0006260
Lan17g1110 329 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1110 Lan-Chr17 18206687 18210840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1110 9 328 Core DNA Replication Machinery Family AT1G63160 92.812 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1110 K10755 - gmx:100781364 613.994