Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1105 ATGGCTGATCCTCATAAAACACCTTCTCTTGCCCCTGACAAGGATATTGACCAGGCAATCGCATCTCTTAAGAAAGGCTCACATCTCTTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAATCTCTAATCATATGGTACTCTGGCAAGGAAGAGAAACAGATTAAGCTCAGCACTGTTTCAAAGATCATCCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGGCCTGAGAAGGAATATCAATCATTTTCTCTTATATATAATAGTGATAGGTCCTTGGATTTGATATGTAAAGATAAAGATGAAGCTGAAATCTGGTTTGTTGCTCTCAAGGCATTAGTTACTCGAGGTAACAATCGCAAGTGGAGATTCGAAACAAGATGTGAAAGTGTGTACTCCGATAGTCCACATTCTGGCACAGGAAGATCCACTCCATCAGATCCAGGAGACAGCAACAGGGTGGTGTTTGACAATTCTTCGCAAAACAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATATTCTGCTGCTAGCAAGAGTCCCTGTCAAACTGAATTAATTGCAAATTCCTCTTTCTCCTCTGCATCTGTGGATACCTCAAACTATCGAAATTCTGCGTCTGAGGCAATTCGTATTAGCCTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTATCATGATGATTTTGATGGCTTAGGTGATATTTTTATCTGGGGAGAAGGTGTTGGTGATGGAATTCTTGGTGGTGGAGCCTCATCTAGTTTTGAGATAGACGCATTCCTCCCCAAGGCCTTGGAATCAAAAGTAGTTCTAGATGTTCACAGTATTGGTTGTGGCTACAAACATGCTGTTATAGTTACCAAACAGGGAGAGATATTTAGTTGGGGAAAGGAGTCAGGAGGTCGGCTTGGTCATGGTGTAGAAGTCGATGTTTCTCACCCTAAGCTCATCGACACGCTTAGTGGCATGAATATTGAATTAGTTGCATGTGGAGAAAGTCATACTTGTGCTGTTACATATTCGGGGGATCTTTTTACTTGGGGTGATGGTACTCACAATTCTGGCTTGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACATGGAGGGTGTACGCATATCATATGTGTCGTGTGGACCTTGGCACACAGCTGTTGTTACCTCAGCGGGGCAGTTGTTTACATTTGGGGATGGAACTTTTGGTGCCTTGGGTCATGGAGATACTAGTAGCACAAATATTCCTCGGGAAGTAGAGACTTTGAAGGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCGGTTGTTGAGATGATAAATGAATCCGTGGAATCTTCTACACACTCTCCTAGTGGAAAACTGTTCACCTGGGGCGATGGAGATAAAAGCCAACTTGGACATGTTGATAGGGAACCTAGACTAGTTCCCGAGTGCGTAATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGTGACACTCTAACAGTTGCTTTGACAACCACAGGATATGTGTATACAATGGGCAGTGCAGCTTATGGACAACTTGGCTGTCCTGCGGCTGATGGGAAAGTCCCTACACGTGTGGAAGATATTATCGGTGACAGTTTTGTTGAAGATATTGCTTGTGGTTCCTATCATGTTGCAGTCCTAACTTCCAGGACAGAGATTTACACATGGGGGAAGGGTTTGAGTGGGCAATTAGGTCATGGAGACAATGATCACCGGAGTAAACCCACACTAGTTGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTCACTGCTGTTGTATGTCTTCGTAAATGGATACCGAGTGTTGACCATTCTGTGTGTTCTGGATGTCGTAATCCTTTTGGATTCAGAAGAAAACGGCATAATTGTTACAACTGTGGTCTTGTCTTTTGCAAAGCATGCACTAGCAGGAAATCAATGAAAGCTGCCCTTGCTCCTAATTCCAACAAGCTGTATCGGGTTTGTGATGACTGCTATTCTAAACTTAAGAAATCTGCAGACTCAGTTTCCTCGCGCCGAAGTGTTAGTTTGAGAAGTGTAAGTTTGCAAGATGGTAAGGTCAGTAAATTACAAGGATCCCTACTAAGGCTTTCATCTTTCGGTTCTATTGGTCAAGCAGAGAGCAGTCACTCAAAGCTTCCTGAATCACATGATAGCCATCTCTTTCCATCTTTGAATGGAAAACTACAAGTGGGGAGTTTTGCTCCTTCAAAATCTTCAAATTCTCTTTCTGAAGATTCCAGGAAACTCCTTTCAGTTTCCGAGTCTGCTCCAATAGTATCTTGCCAACCATCATCTCCAGGTTCCTCAAAGTCAAGCCCACGAAAATCTTGTGAAGCTGTCAATGATGATTCAAAGCAAAAAAATGAAATTCTAAGTCAAGAAGTTATAGCTTTAAGGGCACAAGTTGAAGATCTTAGTTGCAAGTCAAAAAGTCTTGAAGCTGAGCTTGAGAGAACATCAAAGCAATTGAAGGAAGTGAGTGCAGTAGCTGCAGATGAAGCTGCAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTTCCCAGTTGAAGGAAATGGTGCAAAGACGACCAGGACTTAATGCTGACCCAAGAACAGATTTCAATGCTGAAACCACAAAAAATAACGTAAATGACGAGAGCCATATAACAAACAATATAACTCCCATAAATGGGTGCAGCAGCAATGCATCATCGAATCGGATATTGCCTAATGGTACCAAAACACAAAGTGGAAAAGCAGAGTGGGTGGTTCAAGATGAGGCAGGTGTATACATAAGTTTGTCCTCCCTGCCAAGTGGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGGAAGCATTTCACAGAAGAAGAAGCTGAAAACTGGTGGGCTGAAAATGGAGTCAGGGTATTGGAGCGACACAACGTAGTTGCTTCATAG 3024 0.4279 MADPHKTPSLAPDKDIDQAIASLKKGSHLLKYGRRGKPKFCPFRLSNDESLIIWYSGKEEKQIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNSDRSLDLICKDKDEAEIWFVALKALVTRGNNRKWRFETRCESVYSDSPHSGTGRSTPSDPGDSNRVVFDNSSQNKWVKAFSEIISYSAASKSPCQTELIANSSFSSASVDTSNYRNSASEAIRISLSSAVSSSSQGSYHDDFDGLGDIFIWGEGVGDGILGGGASSSFEIDAFLPKALESKVVLDVHSIGCGYKHAVIVTKQGEIFSWGKESGGRLGHGVEVDVSHPKLIDTLSGMNIELVACGESHTCAVTYSGDLFTWGDGTHNSGLLGHGNEVSHWIPKKVSGNMEGVRISYVSCGPWHTAVVTSAGQLFTFGDGTFGALGHGDTSSTNIPREVETLKGLRTTRVSCGVWHTAAVVEMINESVESSTHSPSGKLFTWGDGDKSQLGHVDREPRLVPECVIALDNENICRVACGDTLTVALTTTGYVYTMGSAAYGQLGCPAADGKVPTRVEDIIGDSFVEDIACGSYHVAVLTSRTEIYTWGKGLSGQLGHGDNDHRSKPTLVEFLKDKQVKSVFCGSNFTAVVCLRKWIPSVDHSVCSGCRNPFGFRRKRHNCYNCGLVFCKACTSRKSMKAALAPNSNKLYRVCDDCYSKLKKSADSVSSRRSVSLRSVSLQDGKVSKLQGSLLRLSSFGSIGQAESSHSKLPESHDSHLFPSLNGKLQVGSFAPSKSSNSLSEDSRKLLSVSESAPIVSCQPSSPGSSKSSPRKSCEAVNDDSKQKNEILSQEVIALRAQVEDLSCKSKSLEAELERTSKQLKEVSAVAADEAAKCKSAKEVIKSLTSQLKEMVQRRPGLNADPRTDFNAETTKNNVNDESHITNNITPINGCSSNASSNRILPNGTKTQSGKAEWVVQDEAGVYISLSSLPSGGNELKRVRFSRKHFTEEEAENWWAENGVRVLERHNVVAS* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1105 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 706 IPR013083 -
Lan17g1105 1007 MobiDBLite consensus disorder prediction 141 165 - -
Lan17g1105 1007 ProSiteProfiles BRX domain profile. 948 1003 IPR013591 -
Lan17g1105 1007 Coils Coil 870 890 - -
Lan17g1105 1007 CDD PH_PLC_plant-like 15 125 - -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 525 576 IPR000408 -
Lan17g1105 1007 Gene3D - 15 132 IPR011993 -
Lan17g1105 1007 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Lan17g1105 1007 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 446 456 IPR000408 -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 244 300 IPR000408 -
Lan17g1105 1007 SMART fyve_4 625 696 IPR000306 GO:0046872
Lan17g1105 1007 Gene3D - 364 464 IPR009091 -
Lan17g1105 1007 Gene3D - 188 363 IPR009091 -
Lan17g1105 1007 SUPERFAMILY PH domain-like 16 124 - -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 353 407 IPR000408 -
Lan17g1105 1007 Pfam Regulator of chromosome condensation (RCC1) repeat 579 625 IPR000408 -
Lan17g1105 1007 Pfam Regulator of chromosome condensation (RCC1) repeat 408 456 IPR000408 -
Lan17g1105 1007 Pfam Regulator of chromosome condensation (RCC1) repeat 352 404 IPR000408 -
Lan17g1105 1007 Pfam Regulator of chromosome condensation (RCC1) repeat 472 521 IPR000408 -
Lan17g1105 1007 Pfam Regulator of chromosome condensation (RCC1) repeat 301 349 IPR000408 -
Lan17g1105 1007 Pfam Regulator of chromosome condensation (RCC1) repeat 525 573 IPR000408 -
Lan17g1105 1007 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 17 1001 - -
Lan17g1105 1007 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1001 - -
Lan17g1105 1007 SUPERFAMILY RCC1/BLIP-II 243 630 IPR009091 -
Lan17g1105 1007 PRINTS Chromosome condensation regulator RCC1 signature 303 319 IPR000408 -
Lan17g1105 1007 PRINTS Chromosome condensation regulator RCC1 signature 353 369 IPR000408 -
Lan17g1105 1007 PRINTS Chromosome condensation regulator RCC1 signature 394 410 IPR000408 -
Lan17g1105 1007 PRINTS Chromosome condensation regulator RCC1 signature 410 424 IPR000408 -
Lan17g1105 1007 PRINTS Chromosome condensation regulator RCC1 signature 514 532 IPR000408 -
Lan17g1105 1007 PRINTS Chromosome condensation regulator RCC1 signature 572 593 IPR000408 -
Lan17g1105 1007 Pfam FYVE zinc finger 629 695 IPR000306 GO:0046872
Lan17g1105 1007 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 633 695 IPR017455 -
Lan17g1105 1007 SUPERFAMILY FYVE/PHD zinc finger 630 702 IPR011011 -
Lan17g1105 1007 Coils Coil 814 862 - -
Lan17g1105 1007 Pfam Transcription factor regulating root and shoot growth via Pin3 947 1002 IPR013591 -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 408 459 IPR000408 -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 577 628 IPR000408 -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 473 524 IPR000408 -
Lan17g1105 1007 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 394 404 IPR000408 -
Lan17g1105 1007 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 301 352 IPR000408 -
Lan17g1105 1007 Pfam Transcription factor BRX N-terminal domain 865 893 IPR027988 -
Lan17g1105 1007 MobiDBLite consensus disorder prediction 788 808 - -
Lan17g1105 1007 Gene3D - 467 635 IPR009091 -
Lan17g1105 1007 MobiDBLite consensus disorder prediction 788 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1105 Lan-Chr17 18024030 18032159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1105 946 1004 Major Intrinsic Protein MIP AT1G31880 50.847 1.52e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1105 - - lang:109355968 1353.96