Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1104 ATGGGCCAATTCAATATTTGCTTGCTTTTTCTTTGTTTCTCAATAGTCATATTGGCATCCACCCTGCATGCCAATTTGTTAGAGAGTGACGAGTATTGGAATAATCATGTTGTAGAGTTTGATGAATATTGGAAGGGAAGGGCAAGGATTGCCGAACAAGATAACAAAGCAGCTTATTCATCAGATCCTTATGCTGTCTCTGGCAACCTCTCATCTAGTGTTAGCGAACTCATAGTTGGAAAGGGTGTAAGAAGGAACTTGGGGGGAAGAAACAAGGGACCATGCATGGCCACTAACCCAATTGATAGGTGCTGGAGATGTGACCCAAATTGGGCCAACAATCGCCAAAAGCTAGCTGATTGTGTTCAAGGCTTTGGAAGAAACACAAGAGGTGGCAAAGGTGGTCCATTCTATATTGTAACTGACCCTTCAGATAATGACATGGTTAATCCAAAACCTGGTACTTTACGCCATGCAGTTACAAGAAATGGACCCTTGTGGATCATTTTTTCTCATAACATGATGATATTCCTCAAACAAGAGCTTATAATGTCTAGTAATAAAACCATAGATGGAAGAGGTGCTGATGTTCACATTGCTAATGGTGCTGGCATTACTATACAATATATTAAGAATGTGATCATACATGGGGTTAAGATTTATAACATTCAGGTTCATGGTGGTGGAATGATTAGAGATTCTGAGGATCATTATGGTTTTAGGACTCAAAGTGATGGTGATGGTATTTCAATATTTGGAGCAAGTAATGTTTGGATTGATCATGTTTCAATGAAAAATTGTTATGATGGACTCATTGATGCCATCATGGGATCCACTGCCATTACCATCTCCAACAACCATTTCACTGACCACAATGAGGTGATGCTATTTGGAGCCAGTGATGGGTACAGTGGTGATAAGATAATGCAAATCACTGTAGCATTTAATCACTTTGGGAAGAGATTAGTACAAAGAATGCCAAGATGCAGATTTGGTTTTATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAAAACCCCACCATTATTAGTGAGGGTAACCGATTTATTGGCCCTGACAACATTAATGCTAAACAGGTAACAAAGAGGGAATACGTAACAGAAAGTGTGTGGAAAAACTGGCAATGGAGATCAATAAATGATGAACTGATGAATGGAGCATATTTCACACAGTCAGGTCCTGAGTTGAAAGATAGGCCATTTTCAAGAATGGACATGATCAAAGCTAAGCCTGGTACTTATGTTGGAAGGCTTACACGTTATTCTGGCAAACTTGCATGTAGGGTTGGTAGTCCTTGTTAG 1347 0.3979 MGQFNICLLFLCFSIVILASTLHANLLESDEYWNNHVVEFDEYWKGRARIAEQDNKAAYSSDPYAVSGNLSSSVSELIVGKGVRRNLGGRNKGPCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTRGGKGGPFYIVTDPSDNDMVNPKPGTLRHAVTRNGPLWIIFSHNMMIFLKQELIMSSNKTIDGRGADVHIANGAGITIQYIKNVIIHGVKIYNIQVHGGGMIRDSEDHYGFRTQSDGDGISIFGASNVWIDHVSMKNCYDGLIDAIMGSTAITISNNHFTDHNEVMLFGASDGYSGDKIMQITVAFNHFGKRLVQRMPRCRFGFIHVVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPDNINAKQVTKREYVTESVWKNWQWRSINDELMNGAYFTQSGPELKDRPFSRMDMIKAKPGTYVGRLTRYSGKLACRVGSPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1104 448 Gene3D - 98 441 IPR012334 -
Lan17g1104 448 PANTHER PECTATE LYASE 8 448 - -
Lan17g1104 448 PANTHER PECTATE LYASE 18-RELATED 8 448 IPR045032 GO:0030570
Lan17g1104 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Lan17g1104 448 SMART amb_all 173 370 IPR002022 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lan17g1104 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lan17g1104 448 Pfam Pectate lyase, N terminus 36 87 IPR007524 GO:0030570
Lan17g1104 448 Pfam Pectate lyase 180 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1104 Lan-Chr17 18008617 18011624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1104 36 448 Polysaccharide Lyase AT1G14420 58.837 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1104 K01728 - gmx:100798579 714.531