Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1086 ATGGCTATGGCTTCTTCACTCAGAATCTCAAGGCTTCTCTCTCGCTCTTTATCTTCTGCTTCTACCTCTTTCTTTTCTCCAGGTGGAAGTGCTATTCTAGGTGCAAGGGTTAGTAAGTACACCACTAATGCTGCCATTGAAGAACCAATTAAACCATCAGTTCAAGTAGAGCACACCCAGCTCTTGATTGATGGAAAATTTGTTGATGCTGCTTCTGGTAAAACTTTTCCAACATTGGACCCTAGGACAGGGGAAGTGATTGCTCATGTTGCTGAAGGTCACTCTGAAGATATTGATCGAGCAGTTGCGGCTGCGCGAAAAGCATTTGATCAAGGACCATGGCCGAAGTTGACAGCATATGAAAGGCAAAGGATATTGTTGCGTGCTGCTGATCTGATTGAAAAGCATAATGATGACATTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCTCAGATTGAAATTCCAATGCTGGTTCGACTAGTTCGATACTATGCGGGCTGGGCAGATAAAATTCACGGTCTCACGGTTCCAGCTGACGGGCCATATCATGTGCAAACATTGCACGAACCCATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTTGGACCAGCATTGGCCTGTGGTAACACTATTGTTCTGAAAACAGCTGAGCAGACGCCATTATCTGCTTTATATGTCGCGCGGTTATTTCTTGAGGCTGGACTCCCTCCTGGTGTTTTAAATATTGTGTCGGGCTATGGTCCAACTGCTGGTGCTGCTCTTGCTAGTCACATGGATGTGGATAAGCTTGCTTTTACTGGTTCAACTGAGACCGGAAAAGTTGTCCTTCAATTGGCAGCAAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTCGGTGGAAAGTCTCCCTTTATTGTATGTGAAGATGCTGATATAGATCAGGCTGTTGAGCTAGCACACTTTGCCTTATTCTTTAACCAGGGACAATGTTGCTGTGCTGGGTCTCGAACTTTTGTACATGAAAGTATACATGAGGAGTTTGTTGCGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGAGTGGAATTGAGCAAGGTCCTCAGATTGATTCAGACCAATTTGAGAAAATACTGAAGTATATCAGATCTGGTGTTGAAAGTGGAGCTACCCTTGAAACCGGAGGCGATAGGCTTGGCAACAAGGGTTTCTATGTTCAGCCTACTGTATTCTCAAATGTTCAGGATAACATGCTGATTGCAAAGGAGGAGATATTTGGGCCAGTGCAATCTATATTTAAGTTCAAGGACATTGGTGAAGTAATTGAAAGAGCAAACAACACAAAATATGGTCTTGCAGCAGGAGTATTCACAAAGAACATAGACACTGCAAATACTTTAACAAGAGCATTGAGAGCAGGAACAGTATGGGTAAACTGTTTTGATACATTTGATGCTGCAATTCCTTTTGGTGGCTACAAAATGAGTGGACAAGGAAGAGAAAAGGGAGAGTATAGTCTTAAGAACTACTTGCAAGTTAAGGCTGTTGTTACTCCCTTGAAGAACCCAGCATGGCTTTGA 1620 0.434 MAMASSLRISRLLSRSLSSASTSFFSPGGSAILGARVSKYTTNAAIEEPIKPSVQVEHTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDIDRAVAAARKAFDQGPWPKLTAYERQRILLRAADLIEKHNDDIAALETWDNGKPYEQSAQIEIPMLVRLVRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVARLFLEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTETGKVVLQLAAKSNLKPVTLELGGKSPFIVCEDADIDQAVELAHFALFFNQGQCCCAGSRTFVHESIHEEFVAKAKARALKRVVGDPFKSGIEQGPQIDSDQFEKILKYIRSGVESGATLETGGDRLGNKGFYVQPTVFSNVQDNMLIAKEEIFGPVQSIFKFKDIGEVIERANNTKYGLAAGVFTKNIDTANTLTRALRAGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1086 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 28 539 - -
Lan17g1086 539 SUPERFAMILY ALDH-like 54 533 IPR016161 GO:0016491
Lan17g1086 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Lan17g1086 539 CDD ALDH_F2BC 56 531 - -
Lan17g1086 539 Pfam Aldehyde dehydrogenase family 67 529 IPR015590 GO:0016491
Lan17g1086 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Lan17g1086 539 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 28 539 - -
Lan17g1086 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Lan17g1086 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 529 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1086 Lan-Chr17 17734677 17739315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1086 8 539 Aldehyde Dehydrogenase Gene Family AT3G48000 77.903 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1086 K00128 - gmx:100811891 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0013 18 119629 125027 Lan17g1086 17 17734677 17739315 PCT
Lan17g1086 17 17734677 17739315 Lan18g0013 18 119629 125027 PCT