Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1082 ATGAATGAAATGGAAATAGTAGAATGGCTTAGACCCCTTGTTCATACCAAAGCTTGGGACTTTATAGTTGTTTGGAAATATGGGAATGACCCAACAAGGTATATTGAATGGATGGGTTGTTGTTGTAGTGGAAGTTGCAGTGAAGAAAATATTGAGCAGAATGTGATCAAGCTCAAAGAAGAAGAAATGGATGATGATGATGATGATGATCAATGCTACTTGGCTTCCAATTCCATTTGTAGGGATACACATTTTCATCATCCTATTAGAACTAAGGCTTGTGAGGCACTTGCCAAGGTTCCTTTTGCATTTTCTCTATTTTCTGGGGTCCATGGAGAGATTGCAATATCACAACAACCAAAATGGCTTACCAAGGACCAAGATGGTTCAGTAGGGACACAAGTTCTGATCCCTATTGTTGGTGGTCTTATCGAGCTCTTCACTGCAAAGCTTATTCCAAAAGATATGAGTATCATAGAGTATATATCAGCACACTGTTGTCTCTCTTTGAAGCAAGAAACTACAACTGCTGCGGGGTACGCGAGTCTGAACTTCATTGATCACCTTCCGGGAGCAAAGTGCAGCTCCCATCTTAGCATTGAAGGAACCTCGAGTGGGTCTAATCCTTCAAACGAACATTTATCATTTGATTCAAAGACTCAGCACGAATATCTGAAGCAATTAGTTAAAATATCTCCTACGCCTAAAGTTAAAAGGCCCAAGTACAATGAGGCTGAAGGGAAACAAAGGAAAGGTTTAAGTTCCCATTGTGGCACTATGGAAGAAGATAAAGCGAAACTGGCGAGGCAGCCTCGAAGCGAAACCTTCATTGCTAAAAATCTTGCCACAGAAAGGAAAAGGAGAAACAAAATAAAAAATGGGCTTTTCACGCTACGATCTCTAGTCCCGAAAATAACCAAGATGGATAGAGTATCAATTCTTTCAGACGCAATTGACTACATAAAGGAATTACAGCATGAGGTAAAAGAACTTAAAGATGAAGTTATGGCTTTGGAAGTGGAGGAGTGTGAAAGAAACAAGCCACACTTGAAGATGTCAAATGAGAAAGAACATGGAGGAACGAGACATGCCCCTCTTACCGAACTCAATCAAAGCTCTTTCGAGTGCAACAAAAAGAGGCAGATGAAGGTGCAAGTAGAAGTGTGCCACATCGGTCGGACAGATTTCTTGATTAAGTTATACTGCGAGAAGAAGCAAGGTGGGTTTTCAAGGTTGATGGAAGCTATACATTCATTTGGACTGCAGGTGGTCAGTGCCAATGTGACCACTCTTGATGGCAAAGTCATGAACATTGTAACGGTTAAGGCAACAAAGCAGGATATTCACCCAGCTACACTGAAAGAGTATTTGATAAAGAATGCAGGTGAATGA 1392 0.4088 MNEMEIVEWLRPLVHTKAWDFIVVWKYGNDPTRYIEWMGCCCSGSCSEENIEQNVIKLKEEEMDDDDDDDQCYLASNSICRDTHFHHPIRTKACEALAKVPFAFSLFSGVHGEIAISQQPKWLTKDQDGSVGTQVLIPIVGGLIELFTAKLIPKDMSIIEYISAHCCLSLKQETTTAAGYASLNFIDHLPGAKCSSHLSIEGTSSGSNPSNEHLSFDSKTQHEYLKQLVKISPTPKVKRPKYNEAEGKQRKGLSSHCGTMEEDKAKLARQPRSETFIAKNLATERKRRNKIKNGLFTLRSLVPKITKMDRVSILSDAIDYIKELQHEVKELKDEVMALEVEECERNKPHLKMSNEKEHGGTRHAPLTELNQSSFECNKKRQMKVQVEVCHIGRTDFLIKLYCEKKQGGFSRLMEAIHSFGLQVVSANVTTLDGKVMNIVTVKATKQDIHPATLKEYLIKNAGE* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1082 463 Gene3D - 269 341 IPR036638 GO:0046983
Lan17g1082 463 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 163 IPR025610 -
Lan17g1082 463 Coils Coil 314 341 - -
Lan17g1082 463 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 74 459 - -
Lan17g1082 463 CDD ACT_UUR-ACR-like 397 441 - -
Lan17g1082 463 Pfam Helix-loop-helix DNA-binding domain 282 325 IPR011598 GO:0046983
Lan17g1082 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Lan17g1082 463 MobiDBLite consensus disorder prediction 237 264 - -
Lan17g1082 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 340 IPR036638 GO:0046983
Lan17g1082 463 SMART finulus 281 330 IPR011598 GO:0046983
Lan17g1082 463 PANTHER TRANSCRIPTION FACTOR BHLH90 74 459 - -
Lan17g1082 463 MobiDBLite consensus disorder prediction 236 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1082 Lan-Chr17 17679421 17682307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1082 2 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 30.994 1.73e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g1082 bHLH-MYC_N 1.4e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1082 - - gmx:100807261 540.036