LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan17g1066	ATGTGCTTAGAAACTGTGGCGCACCATGGTGATGATGAACACGATGGTGTAAGTTCTAGAACATCTGGGTCACAAGGAATGAACCAAGTGATGGAGCAAGAAGAGGTTACAATGCTAGATTCTTCCGTGGTTTCAACTCTGACTAATGTTGTGTCCGGGTCAAGACATGGAGGCAGTGAATGGGTCCAGGTCCAGGGAAGTGGTGGTTCTCCTTTGATGTCTGGTTTTGGACATGCATCTCCTTCATCTCCTTCTACTTTGTCTTCTTTCCCTTCTCGTTCTGCTTTGGTTTCTGGGTCATGGGTTGGGAACAAAAGAAGGCGTGATGAAGAGAGTGGTGCTCCTCATCAGTTTATGCAACAAGATGATCCTAGACACTTCAGAACCATTGGTGACTTCAGGGTACCCAAACAAGGAGAGTCATCATCAGAAGCTGCATCCACCACCACCACTGCAATCACGGTGACTGTCACCACGCTGGCGACACCATCGACCGAAACAGCTTCAAACGAAGAAACCATAGAGAGGAGAAGGTACAGGGGAGTGAGGCAAAGGCCATGGGGAAAATGGGCAGCAGAAATTCGAGATCCACACAAAGCAACAAGAGTTTGGCTTGGCACATTTAACACAGCAGAAGCAGCAGCAAGAGCTTATGATGAAGCTGCATTAAGGTTCAGAGGCAACAAAGCAAAGCTAAATTTCCCTGAAAATGTTAGAGCATTGCCACCACCACCAATTCACACTTTTCCAGCCACCACAATGCTGGCAGCCACCCTCTCTGACTCCTCTGACATTCTCCGGCAGCCCTCAGCCGCAACCATGACACCGCCGCAATTTCAGCAGCAGCCATTACTCCAGGGGTCCTCTGATATGATCAGAGACTATTGGGAATATTCACAGTTTCTTCAAAGTTCTGGTGGTTTTCAACAACAATTACAACTACAGCAACAACAACCTTCTAGTTTGTTTCAGCAGTTGTACTATAACTCACAATTGGGTGCCCTTCAATCATCTTTATTGTTATCATCTTCACCTTCTTTGTCTTCTTCTATGTCAGCAACTGCATCATTTTCACCACCTACTCAATTTTCTTCTGCTTCATGTCCCATGTTTTCTAGTCAACAAATGGGCTATTTCGGGCCACCGGGAAACCAAACTCAAGGTGGCGGCGTCACGAGATCGGTGTTTCCACCGCCTACTTGGTCAGATAACAGTGGCCATCAGCCACCTCCTAGTTAA	1239	0.4697	MCLETVAHHGDDEHDGVSSRTSGSQGMNQVMEQEEVTMLDSSVVSTLTNVVSGSRHGGSEWVQVQGSGGSPLMSGFGHASPSSPSTLSSFPSRSALVSGSWVGNKRRRDEESGAPHQFMQQDDPRHFRTIGDFRVPKQGESSSEAASTTTTAITVTVTTLATPSTETASNEETIERRRYRGVRQRPWGKWAAEIRDPHKATRVWLGTFNTAEAAARAYDEAALRFRGNKAKLNFPENVRALPPPPIHTFPATTMLAATLSDSSDILRQPSAATMTPPQFQQQPLLQGSSDMIRDYWEYSQFLQSSGGFQQQLQLQQQQPSSLFQQLYYNSQLGALQSSLLLSSSPSLSSSMSATASFSPPTQFSSASCPMFSSQQMGYFGPPGNQTQGGGVTRSVFPPPTWSDNSGHQPPPS*	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan17g1066	412	PANTHER	DNA-BINDING DOMAIN	39	375	IPR044808	GO:0003700\|GO:0009873
	Lan17g1066	412	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110	39	375	-	-
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	103	126	-	-
	Lan17g1066	412	CDD	AP2	186	237	IPR001471	GO:0003700\|GO:0006355
	Lan17g1066	412	Gene3D	AP2/ERF domain	177	237	IPR036955	GO:0003700\|GO:0006355
	Lan17g1066	412	Pfam	AP2 domain	178	227	IPR001471	GO:0003700\|GO:0006355
	Lan17g1066	412	ProSiteProfiles	AP2/ERF domain profile.	178	235	IPR001471	GO:0003700\|GO:0006355
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	376	402	-	-
	Lan17g1066	412	PRINTS	Ethylene responsive element binding protein signature	179	190	IPR001471	GO:0003700\|GO:0006355
	Lan17g1066	412	PRINTS	Ethylene responsive element binding protein signature	201	217	IPR001471	GO:0003700\|GO:0006355
	Lan17g1066	412	SMART	rav1_2	178	241	IPR001471	GO:0003700\|GO:0006355
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	98	126	-	-
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lan17g1066	412	SUPERFAMILY	DNA-binding domain	178	236	IPR016177	GO:0003677
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	376	412	-	-
	Lan17g1066	412	MobiDBLite	consensus disorder prediction	74	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan17g1066	Lan-Chr17	17329114	17331307	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan17g1066	167	239	AP2-EREBP Transcription Factor Family	AT5G61890	73.973	1.29e-32	121

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lan17g1066		AP2	2.7e-14	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan17g1066	-		-	gmx:100804843	289.271