Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1060 ATGTTAGACCATATGGAATATACTTACTCAGCTGAAGCTTCTGCTGAGGCAGAAACTTATAGCAGCACAACTCCATCATCATCAACCATGAGAAAGAAGAAAAACAAAAACACAAAGAGGTTCAGTGATGAACAAATAAAGTCACTGGAATCAGTGTTTGAGAAGGACTCAAGGCTAGAACCTAGAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGGTTGCATCCAAAACAAGTTGCTATATGGTTTCAGAACAGAAGAGCTAGGTGGAAATCAAAACAACTTGAGAGAGACTACAACATACTTAGATCCAATTATGACAATTTGGCTTCTAAATTTGAAGCTCTCAAGAAGGAAAAACAAGCATTACTAGTACAGTTGCAAAAGGTGAAGGATATAATAGATAAGCGTAAGCCACAAGAGCAAGCTCAAAGTTCTAGTTCTAAACAAGTTAAAGCAGCAAACAGCATGGTCAGTGAAGCCGAAAATGGAGACACAAGCATAAAGTTAGAATACTTTGGCATTGAAGAAGAACCTGGCCTTCTCAATTTTTTTGAAAATCCTGAAGGTTCTTTAACCTCACCAGAAGAATGGAGTACCTTTGACTCTGATGATCTCTTAGCCCAATCAACAAGTGATTTACAATGGTGGGATTTCTGGTCTTGA 663 0.3846 MLDHMEYTYSAEASAEAETYSSTTPSSSTMRKKKNKNTKRFSDEQIKSLESVFEKDSRLEPRKKLQLARELGLHPKQVAIWFQNRRARWKSKQLERDYNILRSNYDNLASKFEALKKEKQALLVQLQKVKDIIDKRKPQEQAQSSSSKQVKAANSMVSEAENGDTSIKLEYFGIEEEPGLLNFFENPEGSLTSPEEWSTFDSDDLLAQSTSDLQWWDFWS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1060 220 CDD homeodomain 41 93 IPR001356 GO:0003677
Lan17g1060 220 Coils Coil 91 132 - -
Lan17g1060 220 MobiDBLite consensus disorder prediction 14 31 - -
Lan17g1060 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 220 IPR045224 GO:0003700
Lan17g1060 220 MobiDBLite consensus disorder prediction 139 157 - -
Lan17g1060 220 SMART HOX_1 32 96 IPR001356 GO:0003677
Lan17g1060 220 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Lan17g1060 220 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Lan17g1060 220 Pfam Homeobox associated leucine zipper 92 131 IPR003106 GO:0006355|GO:0043565
Lan17g1060 220 MobiDBLite consensus disorder prediction 137 157 - -
Lan17g1060 220 Gene3D - 27 99 - -
Lan17g1060 220 MobiDBLite consensus disorder prediction 1 41 - -
Lan17g1060 220 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Lan17g1060 220 SUPERFAMILY Homeodomain-like 19 94 IPR009057 -
Lan17g1060 220 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Lan17g1060 220 Pfam Homeodomain 39 90 IPR001356 GO:0003677
Lan17g1060 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 13 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1060 Lan-Chr17 17115978 17117421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1060 29 220 Homeobox Transcription Factor Family AT2G46680 48.333 1.96e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan17g1060 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1060 K09338 - gmx:100797862 247.284