Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1058 ATGTCAGAACGTGTTGAAACTGATGAGCGAGTGGACTATGATGAAGAAAATTATATGGAAGAAACAGACGAAGATGTTGAAGAACAAATAGATGACGATGGAGTGGATGGACACAGTGATGAAAATGTTGAAGGGATTGAAGAACATGAACACGAGGACTCAGCGGCTGAGGCTGGTGAGGAAGACCAATTGCCTGAAGCAGATAGAAGTGACATTGCTGCTGAGTCTGTAGAACCATCTTTCATTGATGAAGAAGAGAAAAAGAAGCATGATGAACTTCTTGCTCTTCCTCCTCATGGGTCTGAAGTCTTTATTGGTGGACTTCCCCGGGATGTACTTGAAGATGATTTGAGGGAATTGTGTGAGCTGATTGGTGATATTCATGAGGTACGACTGATGAAAGATAGGGACACTAGAGAAGGAAAGGGTTATGCTTTCGTGGCTTTTAAAACAAAAGAGGTAGCAGAAAAGGCCATTGAAGAGTTACACAACAAGGAATTTAAGCATAAAACTTTAAGGTGTTCACTATCTGATACAAAACAAAGATTGTTCATTGGTAATGTTCCAAAAAATTGGACTGAGGATGAGTTTAGGAAAGTCATTGAGGGTGTTGGTCCTGGAGTTGAAAATATCGAGCTCAAAAAGGACCCTCAAAATTCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAAATGTCAAGTGCGAGTTTCAAGTTTGATGGGAATACCCCAACTGTCACATGGGCAGATCCAAAGATATCACCTGATCAGTCTGCTTCTGCTCAGGTAAAAGCTCTTTATGTGAAAAACATACCCGAGAATACTAGTACAGAAGAACTGAAGGAACTTTTCTCTCATAATGGAGAAGTGACAAAAGTGGTCATGCCACCTAGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCATTAAAAGCTACAAAAGATGGAGAGAAATATGAAATCAACGGCCAAGTGCTAGAGGTTGTTCTTGCCAAGCCTCAAGCTGAGAGAAAATCTGATGGAGGTTATGCCTATAATCCTGGATTTCAACCAAATCACTTTCCATATCCTAGTTATGGTGGTGGCTTTGCTGGAAATCTTTATGGCTCTTCAGGAGGTGGATATGGTGCTGCTGGTGGTTTTCAACAGCCAATGATATACGGTCGGGGCCCAATGCCGTCGGGAATGCAGATGGTTCCAATGGTACTACCAGATGGTCAAATTGGCTATGTCCTTCAACAACCTGGTGTACAGATGCCAGCTCCCCGACCACGCAGAAATGATCGAAACAGTGGTCCAAGTGTTCAGTCAGGACGAGCAGGAGGTAGTGGCAGTGACGAAGGAAATCGTGGTAGAAGGTATCGACCCTATTAG 1434 0.4261 MSERVETDERVDYDEENYMEETDEDVEEQIDDDGVDGHSDENVEGIEEHEHEDSAAEAGEEDQLPEADRSDIAAESVEPSFIDEEEKKKHDELLALPPHGSEVFIGGLPRDVLEDDLRELCELIGDIHEVRLMKDRDTREGKGYAFVAFKTKEVAEKAIEELHNKEFKHKTLRCSLSDTKQRLFIGNVPKNWTEDEFRKVIEGVGPGVENIELKKDPQNSSKNRGFAFVLYYNNACADYSRQKMSSASFKFDGNTPTVTWADPKISPDQSASAQVKALYVKNIPENTSTEELKELFSHNGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKATKDGEKYEINGQVLEVVLAKPQAERKSDGGYAYNPGFQPNHFPYPSYGGGFAGNLYGSSGGGYGAAGGFQQPMIYGRGPMPSGMQMVPMVLPDGQIGYVLQQPGVQMPAPRPRRNDRNSGPSVQSGRAGGSGSDEGNRGRRYRPY* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1058 477 Gene3D - 265 401 IPR012677 -
Lan17g1058 477 MobiDBLite consensus disorder prediction 9 38 - -
Lan17g1058 477 Gene3D - 6 181 IPR012677 -
Lan17g1058 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Lan17g1058 477 SUPERFAMILY RNA-binding domain, RBD 98 264 IPR035979 GO:0003676
Lan17g1058 477 MobiDBLite consensus disorder prediction 1 74 - -
Lan17g1058 477 MobiDBLite consensus disorder prediction 435 477 - -
Lan17g1058 477 SUPERFAMILY RNA-binding domain, RBD 271 379 IPR035979 GO:0003676
Lan17g1058 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Lan17g1058 477 MobiDBLite consensus disorder prediction 39 73 - -
Lan17g1058 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lan17g1058 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 249 IPR000504 GO:0003723
Lan17g1058 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Lan17g1058 477 Gene3D - 182 262 IPR012677 -
Lan17g1058 477 MobiDBLite consensus disorder prediction 449 463 - -
Lan17g1058 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 475 - -
Lan17g1058 477 PANTHER GEO13361P1-RELATED 2 475 - -
Lan17g1058 477 SMART rrm1_1 182 259 IPR000504 GO:0003723
Lan17g1058 477 SMART rrm1_1 277 349 IPR000504 GO:0003723
Lan17g1058 477 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lan17g1058 477 CDD RRM_SF 103 175 - -
Lan17g1058 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1058 Lan-Chr17 16872293 16876231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1058 103 447 Eukaryotic Initiation Factors Gene Family AT2G23350 24.869 4.61e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1058 K13161 - gmx:100790907 739.954