Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan17g1056 | ATGTCTCAACAAATGCAATTTCAGATGGTGAGTGGTAACACTACAGATCAATATAATGACACAACATTTACCAAACTCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGAGACACAATGACAAGGTATTTTGAGCAGTTTGGAGAAATCGTAGAGGCTGTTGTGATAACAGACAAGAACACTGGAAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGTGGTAGCTATGAGAGCATGTCAGAACGCATCTCCAGTTATTGATGGGAGGAGAGCAAATTGCAATTTGGCATGTCTTGGTGCAAACAAGAATAAACCACCACCTTCTGATCAGCATGGTGTAGGGAGGTTCAGGCCACCACCTGGACTGGTGGCACCACCTGCTTATCATGGTTCTTCATCATTTTTCCACCAACCCAATGGGCAATACACATTTCCTTATTCAGGTTATGGATATTCTGGATATTCACAAGATACCTTATATCCCACGGGCTATTATGGAATCTATGGAGGTCAACATTTTTCACCTTACTATCAATCAAATGCTGCTTCTGGGGCAGTAGGGTTGGTCCATAATATGTACCCTTACTATGGTCAATATGCACATACTAGCCAAGCTCATGGTTTTGGAGTTCAATACCCTCAAATTACACAATTGCCAATTATGCATCAGCAGCATTATGGCTCTACAGGGATTTTGTCATTTCCTTCTTCAATTCCATTGCCAACTATTACGAGTGCAGTTTCAGCAGCAGCAACAACAACAACTGCAACTACAACAGCAATATCAACATCAAAAGTTTCTGAACAGAATTCTTCATCACAAGGATAA | 837 | 0.4122 | MSQQMQFQMVSGNTTDQYNDTTFTKLFVGGLAWETQRDTMTRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKDPVVAMRACQNASPVIDGRRANCNLACLGANKNKPPPSDQHGVGRFRPPPGLVAPPAYHGSSSFFHQPNGQYTFPYSGYGYSGYSQDTLYPTGYYGIYGGQHFSPYYQSNAASGAVGLVHNMYPYYGQYAHTSQAHGFGVQYPQITQLPIMHQQHYGSTGILSFPSSIPLPTITSAVSAAATTTTATTTAISTSKVSEQNSSSQG* | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan17g1056 | 278 | Gene3D | - | 1 | 117 | IPR012677 | - | |
| Lan17g1056 | 278 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 84 | IPR000504 | GO:0003723 | |
| Lan17g1056 | 278 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 101 | IPR000504 | GO:0003723 | |
| Lan17g1056 | 278 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 | |
| Lan17g1056 | 278 | PANTHER | - | 1 | 260 | - | - | |
| Lan17g1056 | 278 | PANTHER | BOULE-RELATED | 1 | 260 | IPR037366 | GO:0003729 | |
| Lan17g1056 | 278 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - | |
| Lan17g1056 | 278 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 122 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan17g1056 | Lan-Chr17 | 16819929 | 16822367 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan17g1056 | 8 | 99 | C2H2 Transcription Factor Family | AT2G19380 | 36.957 | 3.15e-13 | 67.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan17g1056 | - | - | gmx:100786208 | 389.808 |