Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1050 ATGCTTTCAGCTAATCTTTCCTCAAACTGGCATCATCTATATGCTGTATTGGGTACTTGTAGAATACAAACATCTTTCAACATCTTCTTTACTACATTTTTGCAACACCTACCTTTTTTCTTCTTCTCTCTCACTCTTCCTAGAAGAATGTGGGATCTCAATGACTCACCCGATCAGAGAAGAAAGGGTGAGGAGGAATCAGAAGAAGCGTGTTCTTCTCTAAAGACTTCAATGGATTGTGATGATGATGATAATAATAATAACAATAAAGGAAAAGGAGTTGGATCTGCATCCAATTCAAGTTCTTCTGCAGTGGTTATAGAAGACGGATCAGAAGAAGAAGAAGAAGGTGAAAAGATGATGATGAAGAAGAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCATGAAAGTGATGATTCCATGGATAGTGATAATAATCTCCCACAACCTCTTATGACAACTCGGCAGTTTTTTCCGGTGGAGGAAGCTGATACCGCCGTCACATCAGGCGGTGGCTGCGGTGGAGTATCTTCCTTCCCTCGTGCTCACTGGGTTGGTGTGAAGTTCTGTCAATCAGAAAGAGTTGGTGCTGGAAAATCAGTTGAAGTTTCACAGCCAATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGGAGTTCACAGTATAGAGGTGTCACCTTTTACAGAAGAACAGGTCGATGGGAATCTCACATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAATTCCGAGGAGTAGAGGCAGATATCAACTTCAACATTGAAGACTATGAAGATGACTTAAAGCAGATGAACAATTTGACGAAGGAAGAGTTCGTGCACGTACTTCGTCGACAAAGCACTGGATTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCAGCAAGGGCCTATGACAAAGCAGCAATAAAATGCAACGGCAAAGAAGCTGTCACAAATTTTGATCCAAGCATCTATGACAATGAACTTAACTCTGGTACTACTACCACTGCAGATCACAATCTGGACTTAAGTTTGGGAAATTCCAGCTCCAAGACTAGTAATCATGATCAGCACATGTCATCTGAGTCTAATTGGAGAAATGAGGGTAGCATTAACAAACCAAAGCTGGTGAGTATATTACCAAAACCATATAGTAATAGAAGCAACATTGAAACACATGGTGGAATGGGTGTGCAAGGACAAGCTCACCTTCATTCCTCACCTTCAAATGAATTACAAAGATATGGTCCCTACAAGTCTCTTGGAGAATCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTCATTTTCCCAGCAGCAGCAATGGAAGAAGAGGCCTTATAGGAAGTGATCTTTCATTATCAGTGAGTGATCAACAACAACAGTGGCAATCTGGGCCTCCTCATTATATAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATTATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTAATGAGACCCTCCTCATGA 1677 0.4186 MLSANLSSNWHHLYAVLGTCRIQTSFNIFFTTFLQHLPFFFFSLTLPRRMWDLNDSPDQRRKGEEESEEACSSLKTSMDCDDDDNNNNNKGKGVGSASNSSSSAVVIEDGSEEEEEGEKMMMKKRSSKIFGFSVTHESDDSMDSDNNLPQPLMTTRQFFPVEEADTAVTSGGGCGGVSSFPRAHWVGVKFCQSERVGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSGTTTTADHNLDLSLGNSSSKTSNHDQHMSSESNWRNEGSINKPKLVSILPKPYSNRSNIETHGGMGVQGQAHLHSSPSNELQRYGPYKSLGESQMLHNFAHLQPPNFHFPSSSNGRRGLIGSDLSLSVSDQQQQWQSGPPHYIATAAASSGFPPQIIRPSSQGWLQKNGFHTLMRPSS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1050 558 MobiDBLite consensus disorder prediction 386 417 - -
Lan17g1050 558 Pfam AP2 domain 312 361 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 Pfam AP2 domain 221 269 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 SUPERFAMILY DNA-binding domain 312 372 IPR016177 GO:0003677
Lan17g1050 558 CDD AP2 221 278 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 ProSiteProfiles AP2/ERF domain profile. 221 277 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 555 - -
Lan17g1050 558 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 50 555 - -
Lan17g1050 558 MobiDBLite consensus disorder prediction 55 88 - -
Lan17g1050 558 SMART rav1_2 313 376 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 SMART rav1_2 221 283 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 PRINTS Ethylene responsive element binding protein signature 314 325 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 PRINTS Ethylene responsive element binding protein signature 352 372 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 MobiDBLite consensus disorder prediction 201 221 - -
Lan17g1050 558 SUPERFAMILY DNA-binding domain 220 278 IPR016177 GO:0003677
Lan17g1050 558 MobiDBLite consensus disorder prediction 89 107 - -
Lan17g1050 558 CDD AP2 312 372 IPR001471 GO:0003700|GO:0006355
Lan17g1050 558 MobiDBLite consensus disorder prediction 55 124 - -
Lan17g1050 558 Gene3D AP2/ERF domain 220 279 IPR036955 GO:0003700|GO:0006355
Lan17g1050 558 Gene3D AP2/ERF domain 312 371 IPR036955 GO:0003700|GO:0006355
Lan17g1050 558 ProSiteProfiles AP2/ERF domain profile. 313 370 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1050 Lan-Chr17 16273325 16277517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1050 50 557 AP2-EREBP Transcription Factor Family AT4G36920 55.472 4.95e-140 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan17g1050 AP2 9.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1050 K09284 - gmx:100792442 681.404