Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan17g1050 | ATGCTTTCAGCTAATCTTTCCTCAAACTGGCATCATCTATATGCTGTATTGGGTACTTGTAGAATACAAACATCTTTCAACATCTTCTTTACTACATTTTTGCAACACCTACCTTTTTTCTTCTTCTCTCTCACTCTTCCTAGAAGAATGTGGGATCTCAATGACTCACCCGATCAGAGAAGAAAGGGTGAGGAGGAATCAGAAGAAGCGTGTTCTTCTCTAAAGACTTCAATGGATTGTGATGATGATGATAATAATAATAACAATAAAGGAAAAGGAGTTGGATCTGCATCCAATTCAAGTTCTTCTGCAGTGGTTATAGAAGACGGATCAGAAGAAGAAGAAGAAGGTGAAAAGATGATGATGAAGAAGAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCATGAAAGTGATGATTCCATGGATAGTGATAATAATCTCCCACAACCTCTTATGACAACTCGGCAGTTTTTTCCGGTGGAGGAAGCTGATACCGCCGTCACATCAGGCGGTGGCTGCGGTGGAGTATCTTCCTTCCCTCGTGCTCACTGGGTTGGTGTGAAGTTCTGTCAATCAGAAAGAGTTGGTGCTGGAAAATCAGTTGAAGTTTCACAGCCAATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGGAGTTCACAGTATAGAGGTGTCACCTTTTACAGAAGAACAGGTCGATGGGAATCTCACATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAATTCCGAGGAGTAGAGGCAGATATCAACTTCAACATTGAAGACTATGAAGATGACTTAAAGCAGATGAACAATTTGACGAAGGAAGAGTTCGTGCACGTACTTCGTCGACAAAGCACTGGATTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCAGCAAGGGCCTATGACAAAGCAGCAATAAAATGCAACGGCAAAGAAGCTGTCACAAATTTTGATCCAAGCATCTATGACAATGAACTTAACTCTGGTACTACTACCACTGCAGATCACAATCTGGACTTAAGTTTGGGAAATTCCAGCTCCAAGACTAGTAATCATGATCAGCACATGTCATCTGAGTCTAATTGGAGAAATGAGGGTAGCATTAACAAACCAAAGCTGGTGAGTATATTACCAAAACCATATAGTAATAGAAGCAACATTGAAACACATGGTGGAATGGGTGTGCAAGGACAAGCTCACCTTCATTCCTCACCTTCAAATGAATTACAAAGATATGGTCCCTACAAGTCTCTTGGAGAATCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTCATTTTCCCAGCAGCAGCAATGGAAGAAGAGGCCTTATAGGAAGTGATCTTTCATTATCAGTGAGTGATCAACAACAACAGTGGCAATCTGGGCCTCCTCATTATATAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATTATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTAATGAGACCCTCCTCATGA | 1677 | 0.4186 | MLSANLSSNWHHLYAVLGTCRIQTSFNIFFTTFLQHLPFFFFSLTLPRRMWDLNDSPDQRRKGEEESEEACSSLKTSMDCDDDDNNNNNKGKGVGSASNSSSSAVVIEDGSEEEEEGEKMMMKKRSSKIFGFSVTHESDDSMDSDNNLPQPLMTTRQFFPVEEADTAVTSGGGCGGVSSFPRAHWVGVKFCQSERVGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSGTTTTADHNLDLSLGNSSSKTSNHDQHMSSESNWRNEGSINKPKLVSILPKPYSNRSNIETHGGMGVQGQAHLHSSPSNELQRYGPYKSLGESQMLHNFAHLQPPNFHFPSSSNGRRGLIGSDLSLSVSDQQQQWQSGPPHYIATAAASSGFPPQIIRPSSQGWLQKNGFHTLMRPSS* | 559 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan17g1050 | 558 | MobiDBLite | consensus disorder prediction | 386 | 417 | - | - | |
Lan17g1050 | 558 | Pfam | AP2 domain | 312 | 361 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | Pfam | AP2 domain | 221 | 269 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | SUPERFAMILY | DNA-binding domain | 312 | 372 | IPR016177 | GO:0003677 | |
Lan17g1050 | 558 | CDD | AP2 | 221 | 278 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | ProSiteProfiles | AP2/ERF domain profile. | 221 | 277 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 50 | 555 | - | - | |
Lan17g1050 | 558 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 50 | 555 | - | - | |
Lan17g1050 | 558 | MobiDBLite | consensus disorder prediction | 55 | 88 | - | - | |
Lan17g1050 | 558 | SMART | rav1_2 | 313 | 376 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | SMART | rav1_2 | 221 | 283 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | PRINTS | Ethylene responsive element binding protein signature | 314 | 325 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | PRINTS | Ethylene responsive element binding protein signature | 352 | 372 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | MobiDBLite | consensus disorder prediction | 201 | 221 | - | - | |
Lan17g1050 | 558 | SUPERFAMILY | DNA-binding domain | 220 | 278 | IPR016177 | GO:0003677 | |
Lan17g1050 | 558 | MobiDBLite | consensus disorder prediction | 89 | 107 | - | - | |
Lan17g1050 | 558 | CDD | AP2 | 312 | 372 | IPR001471 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | MobiDBLite | consensus disorder prediction | 55 | 124 | - | - | |
Lan17g1050 | 558 | Gene3D | AP2/ERF domain | 220 | 279 | IPR036955 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | Gene3D | AP2/ERF domain | 312 | 371 | IPR036955 | GO:0003700|GO:0006355 | |
Lan17g1050 | 558 | ProSiteProfiles | AP2/ERF domain profile. | 313 | 370 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan17g1050 | Lan-Chr17 | 16273325 | 16277517 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan17g1050 | 50 | 557 | AP2-EREBP Transcription Factor Family | AT4G36920 | 55.472 | 4.95e-140 | 410 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Lan17g1050 | AP2 | 9.8e-10 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan17g1050 | K09284 | - | gmx:100792442 | 681.404 |