Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1027 ATGGAGGCAATCTACAACACCAATGGGCACAAAGATGATACTACTACTACTACCACCTTTTGCTTATCTAATGCTACCAATGGGGTTGTTAACGTTGGTGACCCACTCAACTGGGGTGTGGCTGCTGAGTCATTGAAGGGGAGCCATTTGGATGAGGTGAAGCGTATGGTGGAAGAGTACCGGAAGCCGGTGGTCCGGCTAGGCGGCGAGACGCTTACTATATCTCAGGTGGCTGCCATCGCTGCCCATGACCAAGGGGTGAAGGTGGAGCTGTCGGAGTCAGCCAGAGCTGGGGTTAAGGCTAGCAGTGACTGGGTCATGGAAAGCATGAATATTGGCACCGATAGCTATGGTGTGACCACCGGGTTCGGTGCTACCTCCCACCGGAGAACCAAGCAGGGCGGTGCCTTGCAAAAGGAGCTCATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGCACAGAGTTCAATTGCACCCTACCACACACAGCAACAAGAGCAGCAATGCTAGTGAGAATCAACACTCTCCTACAAGGTTATTCAGGCATTAGATTTGAAATCTTAGAAGCAATAACAAAGCTACTTAACAACAACATTACCCCATGTTTGCCACTTAGGGGTACAATTACAGCTTCAGGTGACCTTGTACCTCTGTCCTACATTGCTGGGTTGCTAACTGGAAGACATAACTCTAAGGCTGTAGGGCCCACAGGAAAGATCCTTAATGCCAAGGAAGCTTTTGAGTTGGCAAATATTGGTCATGAGTTCTTTGAGTTGCAACCAAAAGAAGGACTTGCACTTGTGAATGGTACTGCTGTTGGTTCTGGCTTAGCTTCTATTGTTTTGTTTGAGGCAAATGTATTAGCTGTTTTGGCTGAAATTATTTCAGCAATCTTTGCTGAAGTGATGCAAGGGAAGCCGGAATTCACTGACCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGGAAGTTCTTATGTGAAAGAAGCTAAGACGTTGCATGACACGGATCCTCTTCAAAAGCCGAAACAAGATCGTTACGCGCTGAGGACTTCACCTCAATGGTTAGGTCCTCTAATTGAAGTGATCAGGTTTTCAACCAAGTCGATAGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCTTGCATGGTGGTAATTTTCAAGGTACACCAATTGGAGTATCTATGGATAACACGCGTTTGGCTATCGCGTCAATTGGGAAACTCTTGTTTGCTCAATTCTCCGAGCTTGTCAATGATTTTTACAACAATGGTTTGCCTTCAAATCTCTCTGCTAGTAGGAACCCCAGCTTGGATTACGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAGCTACAATATCTTGCGAACCCAGTCACAACCCATGTCCAAAGTGCTGAGCAGCATAACCAAGATGTGAACTCTCTTGGTTTGATTTCATCTAGAAAGACTAATGAATCTATCGAGATCCTAAAGCTCATGTCTTCGACTTTCTTGGTCGCGCTTTGCCAAGCAATTGATTTACGGCATTTGGAGGAGAATTTGAAGAACACTGTCAAGAACACTGTGAGTCAAGTTGCTAAGAGGACTCTCACCACAGGTGTCAATGGAGAACTCCACCCTTCAAGATTTTGTGAGAAAGATTTGTTGAAAGTTGTTGATAGGGAGTACCTATTTGCCTACATTGATGACCCTTGCAGTGGTACATACCCATTGATGCAAAAGCTAAGACAAGTGCTTGTGGATCATGCATTAGCAAATGCTGAAACTGAGAAGAATTTTAACACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGGCTCTATTGCCAAAAGAGGTTGAAAGTACAAGGGCTGCATATGAAAGTGGTCAATATGCAATCTCAAACAAGATTAAGGAATGCAGGTCTTATCCACTGTACAAGTTTGTGAGAGAAGAGCTAGGGACTAAGTTGCTGACTGGGGAAAAGTTAGTGTCACCAGGTGAAGAGTGTGACAAAGTGTTCACAGCAATGTGCCAAGGCAAAATTATTGATCCTATTTTGGAATGCCTGAAGGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAG 2178 0.4417 MEAIYNTNGHKDDTTTTTTFCLSNATNGVVNVGDPLNWGVAAESLKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDQGVKVELSESARAGVKASSDWVMESMNIGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTEFNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAVGPTGKILNAKEAFELANIGHEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLAEIISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKTLHDTDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYLFAYIDDPCSGTYPLMQKLRQVLVDHALANAETEKNFNTSIFQKIATFEDELKALLPKEVESTRAAYESGQYAISNKIKECRSYPLYKFVREELGTKLLTGEKLVSPGEECDKVFTAMCQGKIIDPILECLKEWNGAPLPIC* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1027 725 Gene3D - 25 271 IPR024083 -
Lan17g1027 725 Pfam Aromatic amino acid lyase 72 548 IPR001106 -
Lan17g1027 725 PANTHER HISTIDINE AMMONIA-LYASE 24 725 IPR001106 -
Lan17g1027 725 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 34 715 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lan17g1027 725 Gene3D Fumarase/aspartase (Central domain) 272 720 - -
Lan17g1027 725 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 24 725 - -
Lan17g1027 725 Gene3D - 538 659 IPR023144 -
Lan17g1027 725 SUPERFAMILY L-aspartase-like 34 725 IPR008948 GO:0003824
Lan17g1027 725 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Lan17g1027 725 CDD PAL-HAL 70 535 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1027 Lan-Chr17 15269536 15275572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1027 27 725 Monolignol Biosynthesis Gene Families AT2G37040 83.405 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1027 K10775 - gmx:100302735 1290.02