Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g1025 ATGTCTACCTCTGCAACTTCTCTAGCACTTCCTTCTCTTTCACTTCGAACCTTAAAACTCCAACAACCTCAATACTTCACTCCACTTTCACTTCTCAACCCTAACTCAAACCCCATTTCAATTTCTTCAACCTTTCTTCGTTCCAATGCTGCGCCGGTTTCGACATTGTTGTCGTCTCGCTTCGTTTCCAACGTTGCTCTCTCCGAGTTCCACCAGGAAGAGGATGTTTTCAGTGAAGGAGACGATGAGCCTCGTTACAACAACAACAACAGCAACAACAGAAGCAGCGATGAATTCAAGGTCTTTGTTGGTAACCTTCCCTTCGGTGTTGACAGTGCCCAACTTGCTGAGATTTTCGAAGGCGCTGGGGAAGTTGAACGTGTTGAGGTGATTTATGACAAAATGACTGGAAGAAGCAGGGGATTTGGTTTTGTGACTCTGTCTTCAGCTGAGGAAGTTAAAGCAGCTGTTCAGCAATTCAATGGATATGAAGTAGATGGAAGGGAGCTGAGAGTGAATTCTGGACCACCTCCTCCTAAGGATGATAACAGATTTGGGAATTCCCGATTTGATGGAAATTCCCGATTTGATGGTGGTTCCCGTTTTGGGAGGAGTCCTCCTAGAGGAGGTGGTTCTGCTGCAGATAATGGAAATCGAGTTCATGTAAGTAATCTTGCATGGGGTGTTGACCAGTCAGCACTTGAGGAATTGTTCGGGGAACAGGGTAAGGTTTTGGAAGCGAAAGTAATATATGATAGGGAAAGTGGAAGATCAAGAGGATTTGGGTTTGTGACCTACAGTTCCACCGAGGAGGTCAACAAAGCTATTCGGTCCTTAGATGGCGCGGACTTAGATGGCAGATCTATCCGTGTCGCAGTAGCAGATGCTAGGCCCCCGAGACGTGAATTTTAA 912 0.4605 MSTSATSLALPSLSLRTLKLQQPQYFTPLSLLNPNSNPISISSTFLRSNAAPVSTLLSSRFVSNVALSEFHQEEDVFSEGDDEPRYNNNNSNNRSSDEFKVFVGNLPFGVDSAQLAEIFEGAGEVERVEVIYDKMTGRSRGFGFVTLSSAEEVKAAVQQFNGYEVDGRELRVNSGPPPPKDDNRFGNSRFDGNSRFDGGSRFGRSPPRGGGSAADNGNRVHVSNLAWGVDQSALEELFGEQGKVLEAKVIYDRESGRSRGFGFVTYSSTEEVNKAIRSLDGADLDGRSIRVAVADARPPRREF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g1025 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 171 IPR000504 GO:0003723
Lan17g1025 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 290 IPR000504 GO:0003723
Lan17g1025 303 SMART rrm1_1 100 173 IPR000504 GO:0003723
Lan17g1025 303 SMART rrm1_1 219 292 IPR000504 GO:0003723
Lan17g1025 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Lan17g1025 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Lan17g1025 303 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 300 - -
Lan17g1025 303 MobiDBLite consensus disorder prediction 167 217 - -
Lan17g1025 303 SUPERFAMILY RNA-binding domain, RBD 87 203 IPR035979 GO:0003676
Lan17g1025 303 SUPERFAMILY RNA-binding domain, RBD 214 301 IPR035979 GO:0003676
Lan17g1025 303 Gene3D - 212 303 IPR012677 -
Lan17g1025 303 Gene3D - 69 211 IPR012677 -
Lan17g1025 303 PANTHER OS02G0815200 PROTEIN 1 300 - -
Lan17g1025 303 MobiDBLite consensus disorder prediction 74 94 - -
Lan17g1025 303 CDD RRM_HP0827_like 100 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g1025 Lan-Chr17 15199099 15201327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g1025 101 303 Eukaryotic Initiation Factors Gene Family AT3G16380 27.586 1.59e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g1025 - - lang:109360912 429.098